WormBase Tree Display for Gene: WBGene00019072
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WBGene00019072 | SMap | S_parent | Sequence | F58H7 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | fbxc | ||||||
Allele (16) | |||||||
RNASeq_FPKM (74) | |||||||
Ortholog | WBGene00032747 | Caenorhabditis briggsae | From_analysis | OrthoMCL | |||
WBGene00037895 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||
WBGene00038738 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||
WBGene00038739 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||
WBGene00143883 | Caenorhabditis brenneri | From_analysis | TreeFam | ||||
chrIV_pilon.g9593 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
Paralog (37) | |||||||
Structured_description | Concise_description | This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins. | Paper_evidence | WBPaper00012854 | |||
Curator_confirmed | WBPerson567 | ||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||
Automated_description | Enriched in body wall muscle cell and intestine based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and eat-2 based on microarray and RNA-seq studies. Is affected by eleven chemicals including mianserin; Psoralens; and allantoin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Protein of unknown function DUF3557 and Domain of unknown function (DUF3557). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | F58H7.7 | |||||
Corresponding_CDS_history | F58H7.7:wp102 | ||||||
F58H7.7a:wp261 | |||||||
F58H7.7b:wp261 | |||||||
Corresponding_transcript | F58H7.7.1 | ||||||
Experimental_info | RNAi_result | WBRNAi00042477 | Inferred_automatically | RNAi_primary | |||
WBRNAi00016034 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00042471 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00042476 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00042475 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00033146 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1152820 | ||||||
Expr2011739 | |||||||
Expr2029977 | |||||||
Drives_construct | WBCnstr00026085 | ||||||
Construct_product | WBCnstr00026085 | ||||||
Microarray_results | SMD_F58H7.7 | ||||||
180301_s_at | |||||||
182449_s_at | |||||||
Expression_cluster (81) | |||||||
SAGE_tag | SAGE:aagctttgaagtaccta | Strand | Sense | ||||
SAGE:tatctcttcc | Strand | Antisense | |||||
SAGE:aagctttgaa | Strand | Sense | |||||
SAGE:cattttccgatcgtaat | Strand | Antisense | |||||
Interaction (47) | |||||||
Map_info | Map | IV | Position | -23.1044 | Error | 0.036334 | |
Positive | Positive_clone | F58H7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00012854 | ||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |