WormBase Tree Display for Gene: WBGene00018992
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| WBGene00018992 | SMap | S_parent | Sequence | CHROMOSOME_III | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 4 | ||||||||
| Name | CGC_name | trpl-1 | Person_evidence | WBPerson260 | ||||||
| Sequence_name | F56F11.5 | |||||||||
| Molecular_name | F56F11.5 | |||||||||
| Other_name | CELE_F56F11.5 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | trpl-1 | |||||||||
| DB_info | Database | AceView | gene | 3D940 | ||||||
| 3D938 | ||||||||||
| WormQTL | gene | WBGene00018992 | ||||||||
| WormFlux | gene | WBGene00018992 | ||||||||
| NDB | locus_tag | CELE_F56F11.5 | ||||||||
| NCBI | gene | 186408 | ||||||||
| Species | Caenorhabditis elegans | |||||||||
| History | Version_change | 1 | 28 May 2004 13:31:01 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | |||
| 2 | 11 Apr 2012 13:49:30 | WBPerson2970 | Name_change | CGC_name | trpl-1 | |||||
| 3 | 12 Dec 2012 11:44:00 | WBPerson615 | Event | Changed_class | CDS | Pseudogene | ||||
| 4 | 12 Dec 2012 14:13:35 | WBPerson615 | Event | Acquires_merge | WBGene00044407 | |||||
| Acquires_merge | WBGene00044407 | |||||||||
| Status | Live | |||||||||
| Gene_info | Biotype | SO:0000336 | ||||||||
| Gene_class | trpl | |||||||||
| Allele (142) | ||||||||||
| Strain | WBStrain00032478 | |||||||||
| RNASeq_FPKM (74) | ||||||||||
| Ortholog | WBGene00024846 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||||
| WBGene00153536 | Caenorhabditis brenneri | From_analysis | OMA | |||||||
| Structured_description | Automated_description | Is affected by several genes including skn-1; rrf-3; and sir-2.1 based on microarray and RNA-seq studies. Is affected by twelve chemicals including Tunicamycin; stavudine; and Zidovudine based on microarray and RNA-seq studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | |||||||||
| WBPerson37462 | ||||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
| Molecular_info | Corresponding_CDS_history | F56F11.5:wp112 | ||||||||
| F56F11.5:wp236 | ||||||||||
| Corresponding_pseudogene | F56F11.5 | |||||||||
| Other_sequence | PT03034 | |||||||||
| Associated_feature | WBsf650891 | |||||||||
| Experimental_info | Expr_pattern | Expr1013021 | ||||||||
| Expr1016678 | ||||||||||
| Expr1152493 | ||||||||||
| Expr1153256 | ||||||||||
| Microarray_results (19) | ||||||||||
| Expression_cluster (81) | ||||||||||
| Interaction | WBInteraction000239143 | |||||||||
| WBInteraction000248493 | ||||||||||
| WBInteraction000293545 | ||||||||||
| WBInteraction000339228 | ||||||||||
| WBInteraction000361551 | ||||||||||
| WBInteraction000398086 | ||||||||||
| WBInteraction000421386 | ||||||||||
| WBInteraction000449770 | ||||||||||
| Map_info | Map | III | Position | -9.55747 | ||||||
| Positive | Positive_clone | F56F11 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
| Pseudo_map_position | ||||||||||
| Reference | WBPaper00027280 | |||||||||
| WBPaper00038142 | ||||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
