WormBase Tree Display for Gene: WBGene00018950
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| WBGene00018950 | SMap | S_parent | Sequence | F56C9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | F56C9.6 | |||||||
| Molecular_name | F56C9.6a | ||||||||
| F56C9.6a.1 | |||||||||
| CE01325 | |||||||||
| F56C9.6b | |||||||||
| CE41663 | |||||||||
| F56C9.6c | |||||||||
| CE41664 | |||||||||
| F56C9.6b.1 | |||||||||
| F56C9.6c.1 | |||||||||
| Other_name | CELE_F56C9.6 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | F56C9.6 | ||||||||
| DB_info | Database | AceView | gene | 3I398 | |||||
| WormQTL | gene | WBGene00018950 | |||||||
| WormFlux | gene | WBGene00018950 | |||||||
| NDB | locus_tag | CELE_F56C9.6 | |||||||
| NCBI | gene | 176035 | |||||||
| RefSeq | protein | NM_001129231.4 | |||||||
| NM_001129232.4 | |||||||||
| NM_066209.6 | |||||||||
| TrEMBL | UniProtAcc | H2KY87 | |||||||
| A8WFF4 | |||||||||
| H2KY89 | |||||||||
| UniProt_GCRP | UniProtAcc | H2KY89 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:01 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (30) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog | WBGene00023978 | Caenorhabditis briggsae | From_analysis | OrthoMCL | |||||
| OMA | |||||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00035651 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00066423 | Caenorhabditis remanei | From_analysis | OMA | ||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00135876 | Caenorhabditis japonica | From_analysis | Inparanoid_8 | ||||||
| WormBase-Compara | |||||||||
| CSP26.g21688 | Caenorhabditis zanzibari | From_analysis | WormBase-Compara | ||||||
| CSP28.g10348 | Caenorhabditis panamensis | From_analysis | WormBase-Compara | ||||||
| CSP29.g15374 | Caenorhabditis becei | From_analysis | WormBase-Compara | ||||||
| CSP31.g1300 | Caenorhabditis uteleia | From_analysis | WormBase-Compara | ||||||
| CSP32.g1200 | Caenorhabditis sulstoni | From_analysis | WormBase-Compara | ||||||
| CSP39.g4646 | Caenorhabditis waitukubuli | From_analysis | WormBase-Compara | ||||||
| CSP40.g1357 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||||
| Cni-F56C9.6 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
| Csp11.Scaffold628.g7216 | Caenorhabditis tropicalis | From_analysis | WormBase-Compara | ||||||
| Csp5_scaffold_03489.g30358 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||||
| GCK72_008705 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
| Sp34_30034700 | Caenorhabditis inopinata | From_analysis | WormBase-Compara | ||||||
| chrIII_pilon.g8134 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Enriched in M cell; germ line; germline precursor cell; head mesodermal cell; and somatic gonad precursor based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-2; skn-1; and glp-1 based on microarray; proteomic; and RNA-seq studies. Is affected by eleven chemicals including rotenone; bisphenol S; and Zidovudine based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F56C9.6a | |||||||
| F56C9.6b | |||||||||
| F56C9.6c | |||||||||
| Corresponding_CDS_history | F56C9.6:wp183 | ||||||||
| Corresponding_transcript | F56C9.6a.1 | ||||||||
| F56C9.6b.1 | |||||||||
| F56C9.6c.1 | |||||||||
| Other_sequence | CGC00745_1 | ||||||||
| CGC00817_1 | |||||||||
| CR00742 | |||||||||
| CRC11816_1 | |||||||||
| CRC02019_1 | |||||||||
| CJC03110_1 | |||||||||
| CRC02987_1 | |||||||||
| Associated_feature | WBsf651193 | ||||||||
| WBsf651194 | |||||||||
| WBsf992981 | |||||||||
| WBsf992982 | |||||||||
| WBsf226955 | |||||||||
| WBsf226956 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00032949 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00015803 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00048677 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00015802 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00005394 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1015761 | ||||||||
| Expr1038173 | |||||||||
| Expr1152436 | |||||||||
| Expr2004287 | |||||||||
| Expr2022511 | |||||||||
| Drives_construct | WBCnstr00026170 | ||||||||
| Construct_product | WBCnstr00026170 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (155) | |||||||||
| Interaction (303) | |||||||||
| Map_info | Positive | Positive_clone | F56C9 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | III | -0.754081 | |||||||
| Method | Gene |
