WormBase Tree Display for Gene: WBGene00018862
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| WBGene00018862 | SMap | S_parent | Sequence | F55A12 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | ||||||||
| Name | CGC_name | wago-2 | Paper_evidence | WBPaper00035262 | ||||||
| Person_evidence | WBPerson419 | |||||||||
| Sequence_name | F55A12.1 | |||||||||
| Molecular_name | F55A12.1 | |||||||||
| Other_name | C24A11.3 | Paper_evidence | WBPaper00003335 | |||||||
| CELE_F55A12.1 | Accession_evidence | NDB | BX284601 | |||||||
| Public_name | wago-2 | |||||||||
| DB_info | Database | AceView | gene | 1F939 | ||||||
| WormQTL | gene | WBGene00018862 | ||||||||
| WormFlux | gene | WBGene00018862 | ||||||||
| NDB | locus_tag | CELE_F55A12.1 | ||||||||
| NCBI | gene | 186279 | ||||||||
| Species | Caenorhabditis elegans | |||||||||
| History | Version_change | 1 | 28 May 2004 13:31:00 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | |||
| 2 | 14 Oct 2011 15:24:19 | WBPerson2970 | Name_change | CGC_name | wago-2 | |||||
| 3 | 18 Feb 2016 15:26:17 | WBPerson1983 | Event | Changed_class | CDS | Pseudogene | ||||
| Status | Live | |||||||||
| Gene_info | Biotype | SO:0000336 | ||||||||
| Gene_class | wago | |||||||||
| Allele (48) | ||||||||||
| Strain | WBStrain00031803 | |||||||||
| In_cluster | conserved_RDE-1_cluster | |||||||||
| conserved_miRNA_siRNA_cluster | ||||||||||
| RNASeq_FPKM (74) | ||||||||||
| Ortholog | WBGene00060049 | Caenorhabditis remanei | From_analysis | OMA | ||||||
| TreeFam | ||||||||||
| Inparanoid_8 | ||||||||||
| WBGene00031001 | Caenorhabditis briggsae | From_analysis | OrthoMCL | |||||||
| WBGene00033283 | Caenorhabditis briggsae | From_analysis | OrthoMCL | |||||||
| OMA | ||||||||||
| Inparanoid_8 | ||||||||||
| WBGene00042016 | Caenorhabditis briggsae | From_analysis | OrthoMCL | |||||||
| WBGene00123060 | Caenorhabditis japonica | From_analysis | OMA | |||||||
| TreeFam | ||||||||||
| Inparanoid_8 | ||||||||||
| WBGene00098827 | Pristionchus pacificus | From_analysis | OMA | |||||||
| Inparanoid_8 | ||||||||||
| WBGene00154362 | Caenorhabditis brenneri | From_analysis | OMA | |||||||
| TreeFam | ||||||||||
| Inparanoid_8 | ||||||||||
| WBGene00190581 | Caenorhabditis brenneri | From_analysis | TreeFam | |||||||
| Inparanoid_8 | ||||||||||
| Paralog | WBGene00004094 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | ||||||||||
| WBGene00004323 | Caenorhabditis elegans | From_analysis | TreeFam | |||||||
| WBGene00010263 | Caenorhabditis elegans | From_analysis | TreeFam | |||||||
| Inparanoid_8 | ||||||||||
| WBGene00011061 | Caenorhabditis elegans | From_analysis | TreeFam | |||||||
| Inparanoid_8 | ||||||||||
| WBGene00017641 | Caenorhabditis elegans | From_analysis | TreeFam | |||||||
| WBGene00022877 | Caenorhabditis elegans | From_analysis | TreeFam | |||||||
| Inparanoid_8 | ||||||||||
| Structured_description | Automated_description | Enriched in several structures, including AVK; NSM; germ line; germline precursor cell; and head mesodermal cell based on RNA-seq and microarray studies. Is affected by several genes including daf-2; daf-12; and hsf-1 based on microarray; tiling array; and RNA-seq studies. Is affected by eighteen chemicals including manganese chloride; D-glucose; and bisphenol S based on RNA-seq; proteomic; and microarray studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | |||||||||
| WBPerson37462 | ||||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
| Molecular_info | Corresponding_CDS_history | F55A12.1:wp252 | ||||||||
| Corresponding_pseudogene | F55A12.1 | |||||||||
| Other_sequence | CGC00121_1 | |||||||||
| CRC05467_1 | ||||||||||
| CJC07723_1 | ||||||||||
| PPC04866_1 | ||||||||||
| GR978430.1 | ||||||||||
| CBC11260_1 | ||||||||||
| CBC00715_1 | ||||||||||
| PP01117 | ||||||||||
| CR01531 | ||||||||||
| SC00785 | ||||||||||
| Associated_feature | WBsf983671 | |||||||||
| WBsf983672 | ||||||||||
| WBsf1009810 | ||||||||||
| WBsf1009811 | ||||||||||
| WBsf1009812 | ||||||||||
| Experimental_info | Expr_pattern | Expr1019948 | ||||||||
| Expr1038140 | ||||||||||
| Expr1152204 | ||||||||||
| Microarray_results (17) | ||||||||||
| Expression_cluster (159) | ||||||||||
| Interaction (169) | ||||||||||
| Map_info | Map | I | Position | -0.034517 | Error | 0.001693 | ||||
| Positive | Positive_clone | F55A12 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
| Pseudo_map_position | ||||||||||
| Reference | WBPaper00003335 | |||||||||
| WBPaper00004772 | ||||||||||
| WBPaper00028800 | ||||||||||
| WBPaper00029208 | ||||||||||
| WBPaper00043989 | ||||||||||
| WBPaper00057162 | ||||||||||
| WBPaper00059254 | ||||||||||
| WBPaper00063458 | ||||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
