WormBase Tree Display for Gene: WBGene00018794
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| WBGene00018794 | SMap | S_parent | Sequence | F54C4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | attf-3 | Person_evidence | WBPerson260 | |||||
| WBPerson1997 | |||||||||
| Sequence_name | F54C4.3 | ||||||||
| Molecular_name | F54C4.3 | ||||||||
| F54C4.3.1 | |||||||||
| CE42911 | |||||||||
| Other_name | CELE_F54C4.3 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | attf-3 | ||||||||
| DB_info | Database | AceView | gene | 3A690 | |||||
| WormQTL | gene | WBGene00018794 | |||||||
| WormFlux | gene | WBGene00018794 | |||||||
| NDB | locus_tag | CELE_F54C4.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00018794|UniProtKB=G4S460 | |||||||
| family | PTHR33936 | ||||||||
| NCBI | gene | 175173 | |||||||
| RefSeq | protein | NM_001267899.4 | |||||||
| TrEMBL | UniProtAcc | G4S460 | |||||||
| UniProt_GCRP | UniProtAcc | G4S460 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:00 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 22 Sep 2011 11:35:55 | WBPerson2970 | Name_change | CGC_name | attf-3 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | attf | ||||||||
| Allele (843) | |||||||||
| Strain | WBStrain00032341 | ||||||||
| WBStrain00051030 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Contained_in_operon | CEOP3004 | ||||||||
| Ortholog (23) | |||||||||
| Paralog | WBGene00011639 | ||||||||
| Structured_description | Automated_description | Enriched in ABplapaaap; ABprapaaap; germ line; and intestine based on RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-12; hsf-1; and eat-2 based on microarray; RNA-seq; tiling array; and proteomic studies. Is affected by six chemicals including rotenone; Zidovudine; and antimycin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domain: Zinc finger C2H2-type. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F54C4.3 | |||||||
| Corresponding_CDS_history | F54C4.3:wp193 | ||||||||
| F54C4.3b:wp252 | |||||||||
| Corresponding_transcript | F54C4.3.1 | ||||||||
| Other_sequence | EX537728.1 | ||||||||
| CBC10287_1 | |||||||||
| MH05227 | |||||||||
| MJ05017 | |||||||||
| MJ00506 | |||||||||
| Acan_isotig18000 | |||||||||
| Associated_feature | WBsf650780 | ||||||||
| WBsf650781 | |||||||||
| WBsf666507 | |||||||||
| WBsf978520 | |||||||||
| WBsf990977 | |||||||||
| WBsf990978 | |||||||||
| WBsf1014006 | |||||||||
| WBsf226080 | |||||||||
| Transcription_factor | WBTranscriptionFactor000780 | ||||||||
| Experimental_info | RNAi_result (15) | ||||||||
| Expr_pattern | Expr1014120 | ||||||||
| Expr1038105 | |||||||||
| Expr1152059 | |||||||||
| Expr2009516 | |||||||||
| Expr2027753 | |||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (98) | |||||||||
| Interaction (12) | |||||||||
| Map_info | Map | III | Position | -27.0635 | Error | 0.017829 | |||
| Positive | Positive_clone | F54C4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005423 | ||||||||
| WBPaper00010291 | |||||||||
| WBPaper00018142 | |||||||||
| WBPaper00019721 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
