WormBase Tree Display for Gene: WBGene00018786
expand all nodes | collapse all nodes | view schema
| WBGene00018786 | SMap | S_parent | Sequence | CHROMOSOME_I | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | hmbx-1 | Person_evidence | WBPerson42 | |||||
| Sequence_name | F54A5.1 | ||||||||
| Molecular_name | F54A5.1 | ||||||||
| F54A5.1.1 | |||||||||
| CE20859 | |||||||||
| Other_name | C54G6.f | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_F54A5.1 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | hmbx-1 | ||||||||
| DB_info | Database | AceView | gene | 1B465 | |||||
| WormQTL | gene | WBGene00018786 | |||||||
| WormFlux | gene | WBGene00018786 | |||||||
| NDB | locus_tag | CELE_F54A5.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00018786|UniProtKB=Q9TYT0 | |||||||
| family | PTHR14618 | ||||||||
| NCBI | gene | 171679 | |||||||
| RefSeq | protein | NM_001383445.2 | |||||||
| SwissProt | UniProtAcc | Q9TYT0 | |||||||
| TREEFAM | TREEFAM_ID | TF320327 | |||||||
| UniProt_GCRP | UniProtAcc | Q9TYT0 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:00 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 21 May 2010 15:53:40 | WBPerson2970 | Name_change | CGC_name | hmbx-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | hmbx | ||||||||
| Allele (58) | |||||||||
| Strain | WBStrain00033179 | ||||||||
| WBStrain00035003 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (12) | |||||||||
| Ortholog (36) | |||||||||
| Structured_description | Concise_description | hmbx-1 is an ortholog of human HMBOX1 (homeobox containing 1); it belongs to the HNF class of homeobox genes, which encodes an HNF domain and an atypical homeodomain; hmbx-1 is predicted to have DNA binding activity, based on protein domain information; hmbx-1 is expressed in the anal depressor muscle, intestine, anal sphincter muscle, body wall musculature, vulval muscle, ventral nerve cord, and the dorsal nerve cord. | Paper_evidence | WBPaper00046864 | |||||
| WBPaper00026980 | |||||||||
| WBPaper00029055 | |||||||||
| WBPaper00032484 | |||||||||
| WBPaper00036375 | |||||||||
| WBPaper00037048 | |||||||||
| WBPaper00045521 | |||||||||
| Person_evidence | WBPerson83 | ||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 20 Apr 2017 00:00:00 | ||||||||
| Automated_description | Predicted to enable double-stranded telomeric DNA binding activity. Predicted to be involved in positive regulation of DNA-templated transcription. Located in nucleus. Expressed in body wall musculature; enteric muscle; mechanosensory neurons; somatic nervous system; and vulval muscle. Is an ortholog of human HMBOX1 (homeobox containing 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F54A5.1 | |||||||
| Corresponding_transcript | F54A5.1.1 | ||||||||
| Other_sequence (16) | |||||||||
| Associated_feature (17) | |||||||||
| Transcription_factor | WBTranscriptionFactor001020 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00048212 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00116551 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00003761 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00003235 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00032730 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00048213 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr7580 | ||||||||
| Expr15622 | |||||||||
| Expr1022153 | |||||||||
| Expr1038100 | |||||||||
| Expr1152019 | |||||||||
| Expr1200322 | |||||||||
| Expr2012514 | |||||||||
| Expr2030753 | |||||||||
| Drives_construct | WBCnstr00012725 | ||||||||
| WBCnstr00026279 | |||||||||
| Construct_product | WBCnstr00026279 | ||||||||
| WBCnstr00038799 | |||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (163) | |||||||||
| Interaction (13) | |||||||||
| Anatomy_function | WBbtf0563 | ||||||||
| WBbtf0564 | |||||||||
| Map_info | Map | I | Position | -17.4134 | Error | 0.002357 | |||
| Positive | Positive_clone | F54A5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00037048 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00060123 | |||||||||
| WBPaper00061738 | |||||||||
| WBPaper00064339 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
