WormBase Tree Display for Gene: WBGene00018743
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| WBGene00018743 | SMap | S_parent | Sequence | F53B3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | F53B3.5 | |||||||
| Molecular_name | F53B3.5 | ||||||||
| F53B3.5.1 | |||||||||
| CE53648 | |||||||||
| Other_name | CELE_F53B3.5 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | F53B3.5 | ||||||||
| DB_info | Database | AceView | gene | XD492 | |||||
| WormQTL | gene | WBGene00018743 | |||||||
| WormFlux | gene | WBGene00018743 | |||||||
| NDB | locus_tag | CELE_F53B3.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00018743|UniProtKB=Q20713 | |||||||
| family | PTHR21215 | ||||||||
| NCBI | gene | 180578 | |||||||
| RefSeq | protein | NM_076098.9 | |||||||
| TREEFAM | TREEFAM_ID | TF312994 | |||||||
| TrEMBL | UniProtAcc | Q20713 | |||||||
| UniProt_GCRP | UniProtAcc | Q20713 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:00 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (99) | |||||||||
| Strain | WBStrain00033199 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00068860 | ||||||||
| 00123781 | |||||||||
| Ortholog (32) | |||||||||
| Structured_description | Concise_description | F53B3.5 encodes a claudin homolog that may regulate ion channels; F53B3.5 is distantly similar to mammalian voltage-dependent calcium channel gamma subunits that are known or suspected to prevent epilepsy in vivo (e.g., stargazin; MGI:1316660); F53B3.5 has no obvious function in mass RNAi assays; claudins are integral membrane proteins with four transmembrane sequences that are found in mammalian tight junctions (TJs), induce TJs when transgenically expressed in cells normally lacking them, and can mediate the specific conductance of of specific ions (e.g., magnesium or calcium) through TJs while blocking the flow of water. | Paper_evidence | WBPaper00004961 | |||||
| WBPaper00005654 | |||||||||
| WBPaper00005946 | |||||||||
| WBPaper00005975 | |||||||||
| WBPaper00012762 | |||||||||
| WBPaper00012856 | |||||||||
| WBPaper00012941 | |||||||||
| WBPaper00013626 | |||||||||
| WBPaper00018356 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be located in membrane. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F53B3.5 | |||||||
| Corresponding_CDS_history | F53B3.5:wp230 | ||||||||
| F53B3.5:wp272 | |||||||||
| Corresponding_transcript | F53B3.5.1 | ||||||||
| Other_sequence (12) | |||||||||
| Associated_feature (21) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00094877 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00015483 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00048085 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00033498 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00015482 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1014430 | ||||||||
| Expr1038071 | |||||||||
| Expr1151895 | |||||||||
| Expr2004038 | |||||||||
| Expr2022261 | |||||||||
| Microarray_results | SMD_F53B3.4 | ||||||||
| SMD_F53B3.5 | |||||||||
| 172434_at | |||||||||
| 174415_at | |||||||||
| 182840_at | |||||||||
| A_12_P107913 | |||||||||
| Aff_F53B3.4 | |||||||||
| Aff_F53B3.5 | |||||||||
| GPL13394_WBGene00018743 | |||||||||
| GPL13914_F53B3.5 | |||||||||
| GPL14144_F53B3.5_595-654_0.944_10_C | |||||||||
| GPL14144_F53B3.5_820-879_0.955_3_B | |||||||||
| GPL14144_F53B3.5_893-952_0.961_1_A | |||||||||
| GPL19516_CGZ0023365 | |||||||||
| GPL21109_F53B3.5 | |||||||||
| GPL3518_CE30142 | |||||||||
| GPL8304_CE_WBGene00018743_A | |||||||||
| GPL8673_F53B3_5P00566 | |||||||||
| GPL8673_F53B3_5P00579 | |||||||||
| GPL8673_F53B3_5P00759 | |||||||||
| GPL9450_F53B3.5 | |||||||||
| cea2.p.146869 | |||||||||
| Expression_cluster (259) | |||||||||
| Interaction (94) | |||||||||
| Map_info | Positive | Positive_clone | F53B3 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | X | -12.6849 | |||||||
| Method | Gene |
