WormBase Tree Display for Gene: WBGene00018738
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| WBGene00018738 | SMap | S_parent | Sequence | F53B1 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | swip-10 | Paper_evidence | WBPaper00046967 | |||||
| Person_evidence | WBPerson1833 | ||||||||
| Sequence_name | F53B1.6 | ||||||||
| Molecular_name | F53B1.6 | ||||||||
| F53B1.6.1 | |||||||||
| CE53166 | |||||||||
| Other_name | CELE_F53B1.6 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | swip-10 | ||||||||
| DB_info | Database | AceView | gene | XC734 | |||||
| WormQTL | gene | WBGene00018738 | |||||||
| WormFlux | gene | WBGene00018738 | |||||||
| NDB | locus_tag | CELE_F53B1.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00018738|UniProtKB=Q20700 | |||||||
| family | PTHR23200 | ||||||||
| NCBI | gene | 180526 | |||||||
| RefSeq | protein | NM_001373238.1 | |||||||
| TREEFAM | TREEFAM_ID | TF316914 | |||||||
| TrEMBL | UniProtAcc | Q20700 | |||||||
| UniProt_GCRP | UniProtAcc | Q20700 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:00 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 01 Jul 2015 10:32:16 | WBPerson2970 | Name_change | CGC_name | swip-10 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | swip | ||||||||
| Allele (35) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00068815 | ||||||||
| Ortholog (24) | |||||||||
| Paralog | WBGene00015190 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00015388 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00016022 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WormBase-Compara | |||||||||
| WBGene00007717 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Enriched in several structures, including anterior hypodermis; arc ant V; mechanosensory neurons; tail hypodermis; and ventral cord blast cell based on microarray; tiling array; and single-cell RNA-seq studies. Is affected by several genes including rrf-3; eat-2; and pmk-1 based on microarray and RNA-seq studies. Is affected by nineteen chemicals including methylmercury hydroxide; manganese chloride; and D-glucose based on RNA-seq and microarray studies. Human MBLAC1 enables RNA endonuclease activity and metal ion binding activity. Is predicted to encode a protein with the following domains: Metallo-beta-lactamase superfamily; Metallo-beta-lactamase; Ribonuclease Z/Hydroxyacylglutathione hydrolase-like; and Metallo-beta-lactamase domain-containing protein 1. Is an ortholog of human MBLAC1 (metallo-beta-lactamase domain containing 1). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F53B1.6 | |||||||
| Corresponding_CDS_history | F53B1.6:wp271 | ||||||||
| Corresponding_transcript | F53B1.6.1 | ||||||||
| Associated_feature (11) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00015471 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00015470 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00048071 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00032666 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00048072 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1020489 | ||||||||
| Expr1038067 | |||||||||
| Expr1151882 | |||||||||
| Expr2017152 | |||||||||
| Expr2035288 | |||||||||
| Drives_construct | WBCnstr00026305 | ||||||||
| Construct_product | WBCnstr00026305 | ||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (152) | |||||||||
| Interaction (22) | |||||||||
| Map_info | Map | X | Position | -17.0415 | |||||
| Positive | Positive_clone | F53B1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00043539 | |||||||||
| WBPaper00053894 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00058538 | |||||||||
| WBPaper00060850 | |||||||||
| WBPaper00062616 | |||||||||
| WBPaper00064144 | |||||||||
| WBPaper00066336 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
