WormBase Tree Display for Gene: WBGene00018719
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| WBGene00018719 | SMap | S_parent | Sequence | F52H2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | ccd-5 | Person_evidence | WBPerson1103 | |||||
| Author_evidence | A Feresten | ||||||||
| Sequence_name | F52H2.7 | ||||||||
| Molecular_name | F52H2.7 | ||||||||
| F52H2.7.1 | |||||||||
| CE53250 | |||||||||
| Other_name | CELE_F52H2.7 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | ccd-5 | ||||||||
| DB_info | Database | AceView | gene | XD186 | |||||
| WormQTL | gene | WBGene00018719 | |||||||
| WormFlux | gene | WBGene00018719 | |||||||
| NDB | locus_tag | CELE_F52H2.7 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00018719|UniProtKB=O17398 | |||||||
| family | PTHR37412 | ||||||||
| NCBI | gene | 180558 | |||||||
| RefSeq | protein | NM_001373248.4 | |||||||
| TREEFAM | TREEFAM_ID | TF323431 | |||||||
| TrEMBL | UniProtAcc | O17398 | |||||||
| UniProt_GCRP | UniProtAcc | O17398 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:00 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 10 Sep 2020 13:41:14 | WBPerson1983 | Name_change | CGC_name | ccd-5 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ccd | ||||||||
| Allele (74) | |||||||||
| Strain | WBStrain00052157 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00029734 | ||||||||
| 00029735 | |||||||||
| 00029736 | |||||||||
| 00029737 | |||||||||
| 00029738 | |||||||||
| 00029739 | |||||||||
| 00029740 | |||||||||
| 00029741 | |||||||||
| 00123763 | |||||||||
| Ortholog (33) | |||||||||
| Structured_description | Automated_description | Predicted to enable calcium ion binding activity and calcium-dependent phospholipid binding activity. Predicted to be involved in positive regulation of transport and protein localization. Predicted to be located in plasma membrane. Is an ortholog of human C2CD5 (C2 calcium dependent domain containing 5). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F52H2.7 | |||||||
| Corresponding_CDS_history | F52H2.7:wp271 | ||||||||
| Corresponding_transcript | F52H2.7.1 | ||||||||
| Other_sequence (11) | |||||||||
| Associated_feature | WBsf653767 | ||||||||
| WBsf653768 | |||||||||
| WBsf670206 | |||||||||
| WBsf1004371 | |||||||||
| WBsf237098 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00048027 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00032641 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00015440 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1013720 | ||||||||
| Expr1038060 | |||||||||
| Expr1151845 | |||||||||
| Expr2004014 | |||||||||
| Expr2022236 | |||||||||
| Drives_construct | WBCnstr00026317 | ||||||||
| Construct_product | WBCnstr00026317 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (103) | |||||||||
| Map_info | Map | X | Position | -14.3669 | |||||
| Positive | Positive_clone | F52H2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00062472 | |||||||||
| WBPaper00063710 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
