WormBase Tree Display for Gene: WBGene00018680
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| WBGene00018680 | SMap | S_parent | Sequence | F52C12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | tsen-54 | Person_evidence | WBPerson236 | |||||
| Sequence_name | F52C12.3 | ||||||||
| Molecular_name | F52C12.3 | ||||||||
| F52C12.3.1 | |||||||||
| CE19436 | |||||||||
| Other_name | CELE_F52C12.3 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | tsen-54 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:00 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 18 Nov 2014 11:51:19 | WBPerson2970 | Name_change | CGC_name | tsen-54 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | tsen | ||||||||
| Allele (99) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00097285 | ||||||||
| 00097286 | |||||||||
| 00097287 | |||||||||
| 00097288 | |||||||||
| Contained_in_operon | CEOP4052 | ||||||||
| Ortholog (24) | |||||||||
| Structured_description | Automated_description | Predicted to enable endonuclease activity. Predicted to be involved in tRNA-type intron splice site recognition and cleavage. Predicted to be part of tRNA-intron endonuclease complex. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia type 2A; pontocerebellar hypoplasia type 4; and pontocerebellar hypoplasia type 5. Is an ortholog of human TSEN54 (tRNA splicing endonuclease subunit 54). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0060274 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:27561) | ||||
| DOID:0060267 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:27561) | ||||||
| DOID:0060273 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:27561) | ||||||
| Molecular_info | Corresponding_CDS | F52C12.3 | |||||||
| Corresponding_transcript | F52C12.3.1 | ||||||||
| Other_sequence | HC08381 | ||||||||
| Associated_feature (12) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00062258 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00047928 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00032588 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00110855 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00015370 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1021893 | ||||||||
| Expr1038041 | |||||||||
| Expr1151757 | |||||||||
| Expr2017535 | |||||||||
| Expr2035673 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (84) | |||||||||
| Map_info | Positive | Positive_clone | F52C12 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | IV | -12.7356 | |||||||
| Method | Gene |
