WormBase Tree Display for Gene: WBGene00018632
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| WBGene00018632 | SMap | S_parent | Sequence | F49D11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | tag-296 | |||||||
| Sequence_name | F49D11.9 | ||||||||
| Molecular_name | F49D11.9a | ||||||||
| F49D11.9a.1 | |||||||||
| CE52927 | |||||||||
| F49D11.9b | |||||||||
| CE52856 | |||||||||
| F49D11.9b.1 | |||||||||
| Other_name | CELE_F49D11.9 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | tag-296 | ||||||||
| DB_info | Database | AceView | gene | 1L526 | |||||
| WormQTL | gene | WBGene00018632 | |||||||
| WormFlux | gene | WBGene00018632 | |||||||
| NDB | locus_tag | CELE_F49D11.9 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00018632|UniProtKB=A0A3P6NP42 | |||||||
| family | PTHR10219 | ||||||||
| NCBI | gene | 172997 | |||||||
| RefSeq | protein | NM_001368568.3 | |||||||
| NM_001392942.1 | |||||||||
| TrEMBL | UniProtAcc | A0A3P6P940 | |||||||
| A0A3P6NP42 | |||||||||
| UniProt_GCRP | UniProtAcc | A0A3P6NP42 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:00 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 22 Apr 2005 11:55:18 | WBPerson2970 | Name_change | CGC_name | tag-296 | ||||
| 3 | 23 May 2007 16:57:23 | WBPerson1849 | Event | Split_into | WBGene00045433 | ||||
| Split_into | WBGene00045433 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | tag | ||||||||
| Allele (26) | |||||||||
| Strain | WBStrain00031930 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00003455 | ||||||||
| 00003456 | |||||||||
| 00003457 | |||||||||
| 00003458 | |||||||||
| 00003459 | |||||||||
| 00003460 | |||||||||
| 00123723 | |||||||||
| 00123724 | |||||||||
| 00123725 | |||||||||
| Contained_in_operon | CEOP1958 | ||||||||
| Ortholog (34) | |||||||||
| Paralog | WBGene00009120 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00010666 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00022347 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00045433 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable ceramide 1-phosphate binding activity and ceramide 1-phosphate transfer activity. Predicted to be involved in ceramide transport and intermembrane lipid transfer. Predicted to be located in cytosol. Is an ortholog of human CPTP (ceramide-1-phosphate transfer protein). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F49D11.9a | |||||||
| F49D11.9b | |||||||||
| Corresponding_CDS_history | F49D11.9:wp268 | ||||||||
| F49D11.9a:wp176 | |||||||||
| F49D11.9b:wp176 | |||||||||
| Corresponding_transcript | F49D11.9a.1 | ||||||||
| F49D11.9b.1 | |||||||||
| Other_sequence | CJC12589_1 | ||||||||
| CR03611 | |||||||||
| Acan_isotig11144 | |||||||||
| CBC04209_1 | |||||||||
| CRC04019_1 | |||||||||
| CR10078 | |||||||||
| CR01788 | |||||||||
| Oden_isotig21025 | |||||||||
| Associated_feature | WBsf985134 | ||||||||
| WBsf220303 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00116614 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00003729 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00047829 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1016299 | ||||||||
| Expr1038018 | |||||||||
| Expr1151665 | |||||||||
| Expr2017265 | |||||||||
| Expr2035400 | |||||||||
| Microarray_results (13) | |||||||||
| Expression_cluster (84) | |||||||||
| Interaction (64) | |||||||||
| Map_info | Map | I | Position | 5.98335 | Error | 0.059126 | |||
| Positive | Positive_clone | F49D11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5244 | |||||||
| 4480 | |||||||||
| 5481 | |||||||||
| 4410 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064339 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
