WormBase Tree Display for Gene: WBGene00018551
expand all nodes | collapse all nodes | view schema
| WBGene00018551 | SMap | S_parent | Sequence | F47C12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | Sequence_name | F47C12.8 | |||||||
| Molecular_name | F47C12.8 | ||||||||
| F47C12.8.1 | |||||||||
| CE52861 | |||||||||
| Other_name | CELE_F47C12.8 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | F47C12.8 | ||||||||
| DB_info | Database | AceView | gene | 4E756 | |||||
| WormQTL | gene | WBGene00018551 | |||||||
| WormFlux | gene | WBGene00018551 | |||||||
| NDB | locus_tag | CELE_F47C12.8 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00018551|UniProtKB=Q20534 | |||||||
| family | PTHR21479 | ||||||||
| NCBI | gene | 185920 | |||||||
| RefSeq | protein | NM_068056.4 | |||||||
| TREEFAM | TREEFAM_ID | TF322745 | |||||||
| TrEMBL | UniProtAcc | Q20534 | |||||||
| UniProt_GCRP | UniProtAcc | Q20534 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:00 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 22 Feb 2012 10:36:19 | WBPerson1849 | Event | Split_into | WBGene00219377 | ||||
| Split_into | WBGene00219377 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (13) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog | WBGene00209806 | Caenorhabditis japonica | From_analysis | Inparanoid_8 | |||||
| WBGene00133304 | Caenorhabditis japonica | From_analysis | Inparanoid_8 | ||||||
| WBGene00129276 | Caenorhabditis japonica | From_analysis | Inparanoid_8 | ||||||
| WBGene00029280 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||||
| Inparanoid_8 | |||||||||
| WBGene00149558 | Caenorhabditis brenneri | From_analysis | TreeFam | ||||||
| WBGene00078699 | Caenorhabditis remanei | From_analysis | TreeFam | ||||||
| WBGene00162794 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | ||||||
| WormBase-Compara | |||||||||
| WBGene00078637 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||||
| WBGene00079567 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||||
| chrIV_pilon.g10091 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Paralog (35) | |||||||||
| Structured_description | Automated_description | Enriched in AVK; neurons; and in male based on RNA-seq studies. Is affected by several genes including clk-1; aak-2; and lin-15B based on microarray and RNA-seq studies. Is affected by methylmercuric chloride; Tunicamycin; and Atrazine based on microarray studies. Is predicted to encode a protein with the following domains: Protein of unknown function DUF870, Caenorhabditis species and Caenorhabditis elegans protein of unknown function (DUF870). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F47C12.8 | |||||||
| Corresponding_CDS_history | F47C12.8:wp230 | ||||||||
| F47C12.8:wp268 | |||||||||
| Corresponding_transcript | F47C12.8.1 | ||||||||
| Associated_feature | WBsf667861 | ||||||||
| WBsf996136 | |||||||||
| Experimental_info | Expr_pattern | Expr1021138 | |||||||
| Expr1151484 | |||||||||
| Expr2003849 | |||||||||
| Expr2022072 | |||||||||
| Microarray_results | 186276_at | ||||||||
| Aff_F47C12.8 | |||||||||
| GPL19516_CGZ0022371 | |||||||||
| GPL21109_F47C12.8 | |||||||||
| GPL3518_CE10684 | |||||||||
| GPL8673_F47C12_8P00078 | |||||||||
| Expression_cluster (31) | |||||||||
| Interaction (37) | |||||||||
| Map_info | Positive | Positive_clone | F47C12 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | IV | -1.06727 | |||||||
| Method | Gene |
