WormBase Tree Display for Gene: WBGene00018451
expand all nodes | collapse all nodes | view schema
| WBGene00018451 | SMap | S_parent | Sequence | F45D11 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | ||||||||
| Name | Sequence_name | F45D11.4 | ||||||||
| Molecular_name | F45D11.4 | |||||||||
| Other_name | CELE_F45D11.4 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | F45D11.4 | |||||||||
| DB_info | Database | AceView | gene | 2B297 | ||||||
| WormQTL | gene | WBGene00018451 | ||||||||
| NDB | locus_tag | CELE_F45D11.4 | ||||||||
| NCBI | gene | 185782 | ||||||||
| Species | Caenorhabditis elegans | |||||||||
| History | Version_change | 1 | 28 May 2004 13:31:00 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | |||
| 2 | 24 May 2006 09:58:03 | WBPerson1867 | Event | Changed_class | CDS | Pseudogene | ||||
| Status | Live | |||||||||
| Gene_info | Biotype | SO:0000336 | ||||||||
| Allele (23) | ||||||||||
| RNASeq_FPKM (74) | ||||||||||
| Paralog | WBGene00018459 | Caenorhabditis elegans | From_analysis | modENCODE_Pseudogenes | ||||||
| Structured_description | Concise_description | F45D11.4, with F45D11.2 and F45D11.3, encodes a nematode-specific protein that entirely consists of one large (~300-residue) 'domain of unknown function' (DUF684) that is found in several other C. elegans proteins; a transcription unit of either F45D11.4, F45D11.2, or F45D11.3 (genes of essentially identical sequence) has a natural nonsense transcript that is up-regulated in vivo by smg[-] mutations, indicating that at least one of these three genes is a natural substrate for SMG-mediated nonsense suppresssion; since several other natural mRNA substrates of SMG suppression (e.g., rpl-3, rpl-8, rpl-10a, rpl-12) have protein products that are involved in translation, F45D11.4 protein may may function in translation as well. | Paper_evidence | WBPaper00004313 | ||||||
| Curator_confirmed | WBPerson567 | |||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | |||||||||
| Automated_description | Enriched in muscle cell based on microarray studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray and RNA-seq studies. Is affected by eight chemicals including sesamin; Rifampin; and allantoin based on microarray and RNA-seq studies. | Paper_evidence | WBPaper00065943 | |||||||
| Curator_confirmed | WBPerson324 | |||||||||
| WBPerson37462 | ||||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
| Molecular_info | Corresponding_CDS_history | F45D11.4:wp159 | ||||||||
| Corresponding_pseudogene | F45D11.4 | |||||||||
| Experimental_info | Microarray_results | SMD_F45D11.N | ||||||||
| SMD_F45D11.O | ||||||||||
| SMD_F45D11.P | ||||||||||
| SMD_F45D11.Q | ||||||||||
| 172593_x_at | ||||||||||
| 185601_s_at | ||||||||||
| GPL19516_CGZ0021811 | ||||||||||
| GPL21109_F45D11.3 | ||||||||||
| Expression_cluster (63) | ||||||||||
| Interaction | WBInteraction000502142 | |||||||||
| Map_info | Positive | Positive_clone | F45D11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Interpolated_map_position | II | -15.5737 | ||||||||
| Remark | It appears that curators meant to convert this into a Pseudogene in 2005 but this never happened and so was finally done in 2006. | |||||||||
| Method | Gene |
