WormBase Tree Display for Gene: WBGene00018449
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WBGene00018449 | SMap | S_parent | Sequence | F45D11 | ||||||
---|---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | ||||||||
Name | Sequence_name | F45D11.2 | ||||||||
Molecular_name | F45D11.2 | |||||||||
Other_name | CELE_F45D11.2 | Accession_evidence | NDB | BX284602 | ||||||
Public_name | F45D11.2 | |||||||||
DB_info | Database | AceView | gene | 2B311 | ||||||
WormQTL | gene | WBGene00018449 | ||||||||
NDB | locus_tag | CELE_F45D11.2 | ||||||||
NCBI | gene | 185780 | ||||||||
Species | Caenorhabditis elegans | |||||||||
History | Version_change | 1 | 28 May 2004 13:31:00 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | |||
2 | 24 May 2006 09:58:03 | WBPerson1867 | Event | Changed_class | CDS | Pseudogene | ||||
Status | Live | |||||||||
Gene_info | Biotype | SO:0000336 | ||||||||
Allele (18) | ||||||||||
RNASeq_FPKM (74) | ||||||||||
Paralog | WBGene00018459 | Caenorhabditis elegans | From_analysis | modENCODE_Pseudogenes | ||||||
Structured_description | Concise_description | F45D11.2, with F45D11.3 and F45D11.4, encodes a nematode-specific protein that entirely consists of one large (~300-residue) 'domain of unknown function' (DUF684) that is found in several other C. elegans proteins; a transcription unit of either F45D11.2, F45D11.3, or F45D11.4 (genes of essentially identical sequence) has a natural nonsense transcript that is up-regulated in vivo by smg[-] mutations, indicating that at least one of these three genes is a natural substrate for SMG-mediated nonsense suppresssion; F45D11.2 has no obvious function in mass RNAi assays, but, since several other natural mRNA substrates of SMG suppression (e.g., rpl-3, rpl-8, rpl-10a, rpl-12) have protein products that are involved in translation, F45D11.2 protein may may function in translation as well. | Paper_evidence | WBPaper00004313 | ||||||
WBPaper00005654 | ||||||||||
Curator_confirmed | WBPerson567 | |||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | |||||||||
Automated_description | Enriched in muscle cell based on microarray studies. Is affected by several genes including daf-16; skn-1; and pmk-1 based on microarray and RNA-seq studies. Is affected by seven chemicals including sesamin; Rifampin; and allantoin based on microarray and RNA-seq studies. | Paper_evidence | WBPaper00065943 | |||||||
Curator_confirmed | WBPerson324 | |||||||||
WBPerson37462 | ||||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
Molecular_info | Corresponding_CDS_history | F45D11.2:wp159 | ||||||||
Corresponding_pseudogene | F45D11.2 | |||||||||
Experimental_info | Microarray_results | 172593_x_at | ||||||||
185601_s_at | ||||||||||
Aff_F45D11_40.J | ||||||||||
Aff_F45D11_40.L | ||||||||||
Expression_cluster (49) | ||||||||||
Map_info | Positive | Positive_clone | F45D11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Interpolated_map_position | II | -15.5735 | ||||||||
Remark | It appears that curators meant to convert this into a Pseudogene in 2005 but this never happened and so was finally done in 2006. | |||||||||
Method | Gene |