WormBase Tree Display for Gene: WBGene00018200
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WBGene00018200 | SMap | S_parent | Sequence | F39E9 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | btb-17 | Person_evidence | WBPerson261 | |||
Sequence_name | F39E9.11 | ||||||
Molecular_name | F39E9.11 | ||||||
F39E9.11.1 | |||||||
CE32653 | |||||||
Other_name | CELE_F39E9.11 | Accession_evidence | NDB | BX284602 | |||
Public_name | btb-17 | ||||||
DB_info | Database | AceView | gene | 2D585 | |||
WormQTL | gene | WBGene00018200 | |||||
WormFlux | gene | WBGene00018200 | |||||
NDB | locus_tag | CELE_F39E9.11 | |||||
Panther | gene | CAEEL|WormBase=WBGene00018200|UniProtKB=Q8ITZ2 | |||||
family | PTHR22744 | ||||||
NCBI | gene | 173673 | |||||
RefSeq | protein | NM_182200.5 | |||||
TREEFAM | TREEFAM_ID | TF322195 | |||||
TrEMBL | UniProtAcc | Q8ITZ2 | |||||
UniProt_GCRP | UniProtAcc | Q8ITZ2 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | btb | ||||||
Allele (71) | |||||||
RNASeq_FPKM (74) | |||||||
Ortholog (150) | |||||||
Paralog (29) | |||||||
Structured_description | Automated_description | Enriched in ASER; PQR; and intestine based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and age-1 based on microarray; tiling array; and RNA-seq studies. Is affected by fourteen chemicals including rotenone; Tunicamycin; and mianserin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: SKP1/BTB/POZ domain superfamily and BTB/POZ domain. | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | F39E9.11 | |||||
Corresponding_transcript | F39E9.11.1 | ||||||
Other_sequence | CR00014 | ||||||
CRC04954_1 | |||||||
CBC07391_1 | |||||||
CR00107 | |||||||
Associated_feature | WBsf220997 | ||||||
Experimental_info | RNAi_result | WBRNAi00046776 | Inferred_automatically | RNAi_primary | |||
Expr_pattern | Expr1011821 | ||||||
Expr1150648 | |||||||
Expr2009666 | |||||||
Expr2027905 | |||||||
Drives_construct | WBCnstr00026706 | ||||||
Construct_product | WBCnstr00026706 | ||||||
Microarray_results (12) | |||||||
Expression_cluster (164) | |||||||
Map_info | Map | II | Position | -6.88725 | Error | 0.015833 | |
Positive | Positive_clone | F39E9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00065331 | ||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |