WormBase Tree Display for Gene: WBGene00018195
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WBGene00018195 | SMap | S_parent | Sequence | F39E9 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | btb-16 | Person_evidence | WBPerson261 | |||||
Sequence_name | F39E9.2 | ||||||||
Molecular_name | F39E9.2 | ||||||||
F39E9.2.1 | |||||||||
CE32655 | |||||||||
Other_name | CELE_F39E9.2 | Accession_evidence | NDB | BX284602 | |||||
Public_name | btb-16 | ||||||||
DB_info | Database | AceView | gene | 2D587 | |||||
WormQTL | gene | WBGene00018195 | |||||||
WormFlux | gene | WBGene00018195 | |||||||
NDB | locus_tag | CELE_F39E9.2 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00018195|UniProtKB=O17112 | |||||||
family | PTHR22744 | ||||||||
NCBI | gene | 173674 | |||||||
RefSeq | protein | NM_062098.6 | |||||||
TREEFAM | TREEFAM_ID | TF322195 | |||||||
TrEMBL | UniProtAcc | O17112 | |||||||
UniProt_GCRP | UniProtAcc | O17112 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:30:59 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 07 Nov 2007 11:51:23 | WBPerson2970 | Name_change | CGC_name | btb-16 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | btb | ||||||||
Allele (75) | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog (152) | |||||||||
Paralog (29) | |||||||||
Structured_description | Automated_description | Enriched in several structures, including ABarppaapp; ABarpppapp; dopaminergic neurons; head mesodermal cell; and mechanosensory neurons based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and glp-1 based on microarray and RNA-seq studies. Is affected by twenty chemicals including Tunicamycin; mianserin; and stavudine based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: SKP1/BTB/POZ domain superfamily and BTB/POZ domain. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F39E9.2 | |||||||
Corresponding_CDS_history | F39E9.2:wp88 | ||||||||
Corresponding_transcript | F39E9.2.1 | ||||||||
Other_sequence | CR01799 | ||||||||
CRC03531_1 | |||||||||
Associated_feature | WBsf644049 | ||||||||
WBsf220998 | |||||||||
Experimental_info | RNAi_result | WBRNAi00046776 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00014601 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00097119 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1150651 | ||||||||
Expr2009665 | |||||||||
Expr2027904 | |||||||||
Drives_construct | WBCnstr00026708 | ||||||||
Construct_product | WBCnstr00026708 | ||||||||
Microarray_results (13) | |||||||||
Expression_cluster (241) | |||||||||
Interaction (155) | |||||||||
Map_info | Map | II | Position | -6.84748 | Error | 0.016437 | |||
Positive | Positive_clone | F39E9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00065331 | ||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |