WormBase Tree Display for Gene: WBGene00018118
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| WBGene00018118 | SMap | S_parent | Sequence | F36H12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | slfl-4 | Person_evidence | WBPerson1159 | |||||
| Laboratory_evidence | RFK | ||||||||
| Sequence_name | F36H12.2 | ||||||||
| Molecular_name | F36H12.2a | ||||||||
| F36H12.2a.1 | |||||||||
| CE34854 | |||||||||
| F36H12.2b | |||||||||
| CE49225 | |||||||||
| F36H12.2b.1 | |||||||||
| Other_name | F36H12.2 | ||||||||
| CELE_F36H12.2 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | slfl-4 | ||||||||
| DB_info | Database | AceView | gene | 4G41 | |||||
| WormQTL | gene | WBGene00018118 | |||||||
| WormFlux | gene | WBGene00018118 | |||||||
| NDB | locus_tag | CELE_F36H12.2 | |||||||
| NCBI | gene | 185394 | |||||||
| RefSeq | protein | NM_001380220.2 | |||||||
| NM_001306813.4 | |||||||||
| SwissProt | UniProtAcc | O76720 | |||||||
| UniProt_GCRP | UniProtAcc | O76720 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:59 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 29 Sep 2022 22:37:18 | WBPerson21950 | Name_change | CGC_name | slfl-4 | ||||
| Other_name | F36H12.2 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | slfl | ||||||||
| Allele (29) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00038665 | ||||||||
| 00038666 | |||||||||
| Ortholog (18) | |||||||||
| Paralog | WBGene00016460 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Enriched in anal sphincter muscle; germ line; germline precursor cell; and head mesodermal cell based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including eat-2; elt-2; and sir-2.1 based on microarray and RNA-seq studies. Is affected by eight chemicals including manganese chloride; bisphenol S; and allantoin based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F36H12.2a | |||||||
| F36H12.2b | |||||||||
| Corresponding_CDS_history | F36H12.2:wp104 | ||||||||
| Corresponding_transcript | F36H12.2a.1 | ||||||||
| F36H12.2b.1 | |||||||||
| Other_sequence | CRC00533_1 | ||||||||
| CR11021 | |||||||||
| CR01903 | |||||||||
| PT02481 | |||||||||
| Associated_feature | WBsf228282 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00046527 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00014448 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00042009 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00008199 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1037806 | ||||||||
| Expr1150414 | |||||||||
| Expr2003404 | |||||||||
| Expr2021617 | |||||||||
| Drives_construct | WBCnstr00026767 | ||||||||
| Construct_product | WBCnstr00026767 | ||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (101) | |||||||||
| SAGE_tag | SAGE:aaattcccaatattctc | Strand | Sense | ||||||
| Unambiguously_mapped | |||||||||
| SAGE:aaattcccaa | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:attttctctgagaatct | Strand | Antisense | |||||||
| SAGE:aatcctgttg | Strand | Antisense | |||||||
| SAGE:cttccccgtc | Strand | Antisense | |||||||
| Interaction (70) | |||||||||
| Map_info | Positive | Positive_clone | F36H12 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | IV | 1.58805 | |||||||
| Method | Gene |
