WormBase Tree Display for Gene: WBGene00018102
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WBGene00018102 | SMap | S_parent | Sequence | F36H5 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | math-28 | Person_evidence | WBPerson655 | |||||
Sequence_name | F36H5.3 | ||||||||
Molecular_name | F36H5.3a | ||||||||
F36H5.3a.1 | |||||||||
CE35525 | |||||||||
F36H5.3b | |||||||||
CE09960 | |||||||||
F36H5.3b.1 | |||||||||
Other_name | CELE_F36H5.3 | Accession_evidence | NDB | BX284602 | |||||
Public_name | math-28 | ||||||||
DB_info | Database | WormQTL | gene | WBGene00018102 | |||||
SignaLink | protein | WBGene00018102 | |||||||
WormFlux | gene | WBGene00018102 | |||||||
NDB | locus_tag | CELE_F36H5.3 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00018102|UniProtKB=Q2L6V3 | |||||||
family | PTHR46308 | ||||||||
NCBI | gene | 185383 | |||||||
RefSeq | protein | NM_001047308.1 | |||||||
NM_001047307.3 | |||||||||
TREEFAM | TREEFAM_ID | TF322050 | |||||||
TrEMBL | UniProtAcc | Q2L6V3 | |||||||
P91298 | |||||||||
UniProt_GCRP | UniProtAcc | Q2L6V3 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:30:59 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 12 Dec 2005 17:54:47 | WBPerson2970 | Name_change | CGC_name | math-28 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | math | ||||||||
Allele (95) | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog | WBGene00154588 | Caenorhabditis brenneri | From_analysis | TreeFam | |||||
WBGene00143314 | Caenorhabditis brenneri | From_analysis | WormBase-Compara | ||||||
Csp11.Scaffold630.g19300 | Caenorhabditis tropicalis | From_analysis | WormBase-Compara | ||||||
Csp11.Scaffold630.g19304 | Caenorhabditis tropicalis | From_analysis | WormBase-Compara | ||||||
chrII_pilon.g3468 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Paralog (85) | |||||||||
Structured_description | Automated_description | Enriched in several structures, including ABplpapppa; ABplpppppp; ABprpppppp; dopaminergic neurons; and mechanosensory neurons based on microarray; tiling array; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and eat-2 based on microarray; tiling array; and RNA-seq studies. Is affected by eleven chemicals including Tunicamycin; Sodium Chloride; and metformin based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: MATH/TRAF domain; MATH domain; and TRAF-like. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info (4) | |||||||||
Experimental_info | RNAi_result | WBRNAi00014456 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00046542 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00031884 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern (4) | |||||||||
Microarray_results (22) | |||||||||
Expression_cluster (134) | |||||||||
SAGE_tag | SAGE:ttgaaattta | Strand | Sense | ||||||
Unambiguously_mapped | |||||||||
SAGE:aagtccttct | Strand | Antisense | |||||||
SAGE:ttggcaatat | Strand | Antisense | |||||||
SAGE:gagaaggact | Strand | Sense | |||||||
Unambiguously_mapped | |||||||||
SAGE:aataaacctc | Strand | Antisense | |||||||
SAGE:gtttttttca | Strand | Antisense | |||||||
SAGE:tgaaaattaa | Strand | Sense | |||||||
Unambiguously_mapped | |||||||||
SAGE:aataaacctcacacaag | Strand | Antisense | |||||||
SAGE:agagagcagg | Strand | Antisense | |||||||
SAGE:gaatctcaaa | Strand | Antisense | |||||||
Interaction | WBInteraction000192087 | ||||||||
WBInteraction000338149 | |||||||||
WBInteraction000352732 | |||||||||
WBInteraction000365770 | |||||||||
WBInteraction000413487 | |||||||||
Map_info | Map | II | Position | -14.4752 | Error | 0.004334 | |||
Positive | Positive_clone | F36H5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |