WormBase Tree Display for Gene: WBGene00018102
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WBGene00018102 | SMap | S_parent | Sequence | F36H5 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | math | ||||||
Allele (95) | |||||||
RNASeq_FPKM (74) | |||||||
Ortholog | WBGene00154588 | Caenorhabditis brenneri | From_analysis | TreeFam | |||
WBGene00143314 | Caenorhabditis brenneri | From_analysis | WormBase-Compara | ||||
Csp11.Scaffold630.g19300 | Caenorhabditis tropicalis | From_analysis | WormBase-Compara | ||||
Csp11.Scaffold630.g19304 | Caenorhabditis tropicalis | From_analysis | WormBase-Compara | ||||
chrII_pilon.g3468 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
Paralog (85) | |||||||
Structured_description | Automated_description | Enriched in several structures, including ABplpapppa; ABplpppppp; ABprpppppp; dopaminergic neurons; and mechanosensory neurons based on microarray; tiling array; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and eat-2 based on microarray; tiling array; and RNA-seq studies. Is affected by eleven chemicals including Tunicamycin; Sodium Chloride; and metformin based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: MATH/TRAF domain; MATH domain; and TRAF-like. | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | F36H5.3a | |||||
F36H5.3b | |||||||
Corresponding_CDS_history (2) | |||||||
Corresponding_transcript | F36H5.3a.1 | ||||||
F36H5.3b.1 | |||||||
Associated_feature | WBsf986808 | ||||||
Experimental_info | RNAi_result | WBRNAi00014456 | Inferred_automatically | RNAi_primary | |||
WBRNAi00046542 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00031884 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1015608 | ||||||
Expr1150434 | |||||||
Expr2013404 | |||||||
Expr2031638 | |||||||
Microarray_results (22) | |||||||
Expression_cluster (134) | |||||||
SAGE_tag | SAGE:ttgaaattta | Strand | Sense | ||||
Unambiguously_mapped | |||||||
SAGE:aagtccttct | Strand | Antisense | |||||
SAGE:ttggcaatat | Strand | Antisense | |||||
SAGE:gagaaggact | Strand | Sense | |||||
Unambiguously_mapped | |||||||
SAGE:aataaacctc | Strand | Antisense | |||||
SAGE:gtttttttca | Strand | Antisense | |||||
SAGE:tgaaaattaa | Strand | Sense | |||||
Unambiguously_mapped | |||||||
SAGE:aataaacctcacacaag | Strand | Antisense | |||||
SAGE:agagagcagg | Strand | Antisense | |||||
SAGE:gaatctcaaa | Strand | Antisense | |||||
Interaction | WBInteraction000192087 | ||||||
WBInteraction000338149 | |||||||
WBInteraction000352732 | |||||||
WBInteraction000365770 | |||||||
WBInteraction000413487 | |||||||
Map_info | Map | II | Position | -14.4752 | Error | 0.004334 | |
Positive | Positive_clone | F36H5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |