WormBase Tree Display for Gene: WBGene00018088
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| WBGene00018088 | SMap | S_parent | Sequence | F36D4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | trpp-4 | Person_evidence | WBPerson3188 | |||||
| Sequence_name | F36D4.2 | ||||||||
| Molecular_name | F36D4.2 | ||||||||
| F36D4.2.1 | |||||||||
| CE07190 | |||||||||
| Other_name | CELE_F36D4.2 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | trpp-4 | ||||||||
| DB_info | Database | AceView | gene | 5J881 | |||||
| WormQTL | gene | WBGene00018088 | |||||||
| WormFlux | gene | WBGene00018088 | |||||||
| NDB | locus_tag | CELE_F36D4.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00018088|UniProtKB=Q20100 | |||||||
| family | PTHR23249 | ||||||||
| NCBI | gene | 185357 | |||||||
| RefSeq | protein | NM_073034.2 | |||||||
| TREEFAM | TREEFAM_ID | TF314561 | |||||||
| TrEMBL | UniProtAcc | Q20100 | |||||||
| UniProt_GCRP | UniProtAcc | Q20100 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:59 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 08 Aug 2013 16:41:57 | WBPerson2970 | Name_change | CGC_name | trpp-4 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | trpp | ||||||||
| Allele (22) | |||||||||
| Strain | WBStrain00031845 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Contained_in_operon | CEOP5228 | ||||||||
| Ortholog (34) | |||||||||
| Paralog | WBGene00077643 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to be located in Golgi apparatus and endoplasmic reticulum. Predicted to be part of TRAPP complex. Is an ortholog of human TRAPPC4 (trafficking protein particle complex subunit 4). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F36D4.2 | |||||||
| Corresponding_transcript | F36D4.2.1 | ||||||||
| Other_sequence (37) | |||||||||
| Associated_feature | WBsf647070 | ||||||||
| WBsf232244 | |||||||||
| WBsf232245 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00031852 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00046480 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1015337 | ||||||||
| Expr1037792 | |||||||||
| Expr1150357 | |||||||||
| Expr2017511 | |||||||||
| Expr2035650 | |||||||||
| Drives_construct | WBCnstr00026783 | ||||||||
| Construct_product | WBCnstr00026783 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (71) | |||||||||
| Interaction (26) | |||||||||
| Map_info | Map | V | Position | 2.01907 | |||||
| Positive | Positive_clone | F36D4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
