WormBase Tree Display for Gene: WBGene00017961

WBGene00017961 SMap: S_parent: Sequence: F31F4
  Identity: Version: 2
    Name: CGC_name: nhr-180 Person_evidence: WBPerson600
      Sequence_name: F31F4.12
      Molecular_name: F31F4.12
        F31F4.12.1
        CE17736
      Other_name: CELE_F31F4.12 Accession_evidence: NDB BX284605
      Public_name: nhr-180
    DB_info: Database: AceView gene 5B144
        WormQTL gene WBGene00017961
        WormFlux gene WBGene00017961
        NDB locus_tag CELE_F31F4.12
        Panther gene CAEEL|WormBase=WBGene00017961|UniProtKB=O17131
          family PTHR45680
        NCBI gene 185170
        RefSeq protein NM_070885.3
        TREEFAM TREEFAM_ID TF315604
        TrEMBL UniProtAcc O17131
        UniProt_GCRP UniProtAcc O17131
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:59 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 22 Jul 2005 10:29:12 WBPerson2970 Name_change: CGC_name: nhr-180
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nhr
    Allele (122)
    RNASeq_FPKM (74)
    GO_annotation: 00029373
      00029374
      00029375
      00029376
      00123225
      00123226
      00123227
      00123228
    Ortholog: WBGene00063403 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00138671 Caenorhabditis japonica From_analysis: TreeFam
      WBGene00190673 Caenorhabditis brenneri From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00041905 Caenorhabditis briggsae From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00223242 Brugia malayi From_analysis: WormBase-Compara
      CSP26.g19078 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g6177 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g8474 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g20403 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP31.g26578 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g18188 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP39.g10471 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g12058 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cni-nhr-145 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g14856 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_05903.g35766 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_16276 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_021584 Caenorhabditis remanei From_analysis: WormBase-Compara
      Pan_g657 Panagrellus redivivus From_analysis: WormBase-Compara
      chrV_pilon.g13077 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00242085 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00288616 Trichuris muris From_analysis: WormBase-Compara
    Paralog (218)
    Structured_description: Automated_description: Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Expressed in intestine. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F31F4.12
    Corresponding_transcript: F31F4.12.1
    Associated_feature: WBsf652451
      WBsf978524
      WBsf233284
    Transcription_factor: WBTranscriptionFactor000997
  Experimental_info: RNAi_result: WBRNAi00014163 Inferred_automatically: RNAi_primary
      WBRNAi00031632 Inferred_automatically: RNAi_primary
      WBRNAi00046040 Inferred_automatically: RNAi_primary
      WBRNAi00046039 Inferred_automatically: RNAi_primary
      WBRNAi00114471 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr7533
      Expr1022094
      Expr1149933
      Expr2014082
      Expr2032322
    Drives_construct: WBCnstr00012678
      WBCnstr00026885
    Construct_product: WBCnstr00026885
    Microarray_results (20)
    Expression_cluster (137)
    Interaction: WBInteraction000336328
      WBInteraction000534656
  Map_info: Map: V Position: -19.968
    Positive: Positive_clone: F31F4 Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 5353
        4342
    Pseudo_map_position
  Reference: WBPaper00057578
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene