WormBase Tree Display for Gene: WBGene00017900
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| WBGene00017900 | SMap | S_parent | Sequence | F28E10 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | F28E10.1 | |||||||
| Molecular_name (30) | |||||||||
| Other_name | CELE_F28E10.1 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | F28E10.1 | ||||||||
| DB_info | Database | AceView | gene | 4F353 | |||||
| WormQTL | gene | WBGene00017900 | |||||||
| WormFlux | gene | WBGene00017900 | |||||||
| NDB | locus_tag | CELE_F28E10.1 | |||||||
| NCBI | gene | 177223 | |||||||
| RefSeq | protein | NM_001380201.1 | |||||||
| NM_001307314.3 | |||||||||
| NM_001307315.4 | |||||||||
| NM_001027982.5 | |||||||||
| NM_001380199.1 | |||||||||
| NM_001027983.4 | |||||||||
| NM_001380200.1 | |||||||||
| NM_001268335.4 | |||||||||
| NM_001027981.6 | |||||||||
| NM_001027984.5 | |||||||||
| TREEFAM | TREEFAM_ID | TF344064 | |||||||
| TrEMBL | UniProtAcc | H2KZT7 | |||||||
| H2KZT6 | |||||||||
| H2KZT8 | |||||||||
| D7SFK5 | |||||||||
| U4PQQ4 | |||||||||
| U4PDU4 | |||||||||
| U4PAK4 | |||||||||
| U4PLE4 | |||||||||
| U4PAZ0 | |||||||||
| D7SFK7 | |||||||||
| UniProt_GCRP | UniProtAcc | U4PAK4 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:59 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (308) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (25) | |||||||||
| Structured_description | Automated_description | Enriched in XXX cell; head mesodermal cell; neurons; retrovesicular ganglion; and ventral nerve cord based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and eat-2 based on tiling array; microarray; and RNA-seq studies. Is affected by nine chemicals including stavudine; Zidovudine; and Psoralens based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domain: Phosphorylation site. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F28E10.1a | |||||||
| F28E10.1b | |||||||||
| F28E10.1c | |||||||||
| F28E10.1d | |||||||||
| F28E10.1e | |||||||||
| F28E10.1f | |||||||||
| F28E10.1g | |||||||||
| F28E10.1h | |||||||||
| F28E10.1i | |||||||||
| F28E10.1j | |||||||||
| Corresponding_CDS_history | F28E10.1a:wp134 | ||||||||
| Corresponding_transcript | F28E10.1a.1 | ||||||||
| F28E10.1b.1 | |||||||||
| F28E10.1c.1 | |||||||||
| F28E10.1d.1 | |||||||||
| F28E10.1e.1 | |||||||||
| F28E10.1f.1 | |||||||||
| F28E10.1g.1 | |||||||||
| F28E10.1h.1 | |||||||||
| F28E10.1i.1 | |||||||||
| F28E10.1j.1 | |||||||||
| Other_sequence (11) | |||||||||
| Associated_feature (34) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00000529 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00014052 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00045838 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00031532 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1012374 | ||||||||
| Expr1037695 | |||||||||
| Expr1149745 | |||||||||
| Expr2003107 | |||||||||
| Expr2021321 | |||||||||
| Microarray_results (44) | |||||||||
| Expression_cluster (201) | |||||||||
| Interaction | WBInteraction000030957 | ||||||||
| WBInteraction000364704 | |||||||||
| Map_info | Positive | Positive_clone | F28E10 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | IV | 0.470151 | |||||||
| Reference | WBPaper00012571 | ||||||||
| WBPaper00026601 | |||||||||
| WBPaper00031852 | |||||||||
| Method | Gene |
