WormBase Tree Display for Gene: WBGene00017881

WBGene00017881 SMap: S_parent: Sequence: F28A12
  Identity: Version: 2
    Name: CGC_name: asp-13 Person_evidence: WBPerson261
      Sequence_name: F28A12.4
      Molecular_name: F28A12.4
        F28A12.4.1
        CE09738
      Other_name: CELE_F28A12.4 Accession_evidence: NDB BX284605
      Public_name: asp-13
    DB_info: Database: AceView gene 5J122
        WormQTL gene WBGene00017881
        WormFlux gene WBGene00017881
        NDB locus_tag CELE_F28A12.4
        Panther gene CAEEL|WormBase=WBGene00017881|UniProtKB=Q22972
          family PTHR47966
        NCBI gene 179247
        RefSeq protein NM_072831.7
        TREEFAM TREEFAM_ID TF315800
        TrEMBL UniProtAcc Q22972
        UniProt_GCRP UniProtAcc Q22972
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:59 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 23 Nov 2012 14:10:21 WBPerson2970 Name_change: CGC_name: asp-13
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: asp
    Allele (18)
    RNASeq_FPKM (74)
    GO_annotation: 00076874
      00076875
      00076876
      00076877
      00076878
      00076879
      00076880
      00123185
      00123186
    Contained_in_operon: CEOP5208
    Ortholog: WBGene00062044 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00024695 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00160366 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00134695 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      CBOVI.g2069 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g1576 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g20847 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g4109 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g8336 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g5148 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g14059 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g735 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g28993 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g4165 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g2789 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00632.g12987 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_01192.g15936 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-asp-13 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g10844 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_02445.g26511 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_21779 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_018899 Caenorhabditis remanei From_analysis: WormBase-Compara
      Sp34_50118300 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrV_pilon.g15044 Caenorhabditis elegans From_analysis: WormBase-Compara
      SGD:S000004111 Saccharomyces cerevisiae From_analysis: OMA
            OrthoFinder
            SonicParanoid
      SGD:S000006075 Saccharomyces cerevisiae From_analysis: Panther
            PhylomeDB
            SonicParanoid
    Paralog (17)
    Structured_description: Automated_description: Predicted to enable aspartic-type endopeptidase activity. Predicted to be involved in proteolysis. Predicted to be located in lysosome. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F28A12.4
    Corresponding_transcript: F28A12.4.1
    Other_sequence: CBC09928_1
      CR02428
      CBC09588_1
      CBC00665_1
      CR11450
      CRC12045_1
      CRC05962_1
      CJC03925_1
    Associated_feature (15)
  Experimental_info: RNAi_result: WBRNAi00076354 Inferred_automatically: RNAi_primary
      WBRNAi00031510 Inferred_automatically: RNAi_primary
      WBRNAi00045774 Inferred_automatically: RNAi_primary
      WBRNAi00045773 Inferred_automatically: RNAi_primary
      WBRNAi00089061 Inferred_automatically: RNAi_primary
      WBRNAi00014020 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1012190
      Expr1037684
      Expr1149685
      Expr2009461
      Expr2027698
    Drives_construct: WBCnstr00026943
    Construct_product: WBCnstr00026943
    Microarray_results (19)
    Expression_cluster (337)
    Interaction (140)
  Map_info: Map: V Position: 1.52989
    Positive: Positive_clone: F28A12 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00026592
    WBPaper00028482
    WBPaper00029197
    WBPaper00038491
    WBPaper00055090
    WBPaper00059755
    WBPaper00065026
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene