WormBase Tree Display for Gene: WBGene00017718
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| WBGene00017718 | SMap | S_parent | Sequence | F22F4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | F22F4.5 | |||||||
| Molecular_name | F22F4.5 | ||||||||
| F22F4.5.1 | |||||||||
| CE35504 | |||||||||
| Other_name | F22F4.c | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_F22F4.5 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | F22F4.5 | ||||||||
| DB_info | Database | AceView | gene | XG610 | |||||
| WormFlux | gene | WBGene00017718 | |||||||
| NDB | locus_tag | CELE_F22F4.5 | |||||||
| NCBI | gene | 3565477 | |||||||
| RefSeq | protein | NM_001029428.3 | |||||||
| TrEMBL | UniProtAcc | Q7JNW8 | |||||||
| UniProt_GCRP | UniProtAcc | Q7JNW8 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:59 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (15) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog | WBGene00035202 | Caenorhabditis briggsae | From_analysis | Hillier-set | |||||
| OrthoMCL | |||||||||
| OMA | |||||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00051590 | Caenorhabditis remanei | From_analysis | OMA | ||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00146649 | Caenorhabditis brenneri | From_analysis | OMA | ||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00121103 | Caenorhabditis japonica | From_analysis | OMA | ||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| CBOVI.g3343 | Caenorhabditis bovis | From_analysis | WormBase-Compara | ||||||
| CSP26.g21955 | Caenorhabditis zanzibari | From_analysis | WormBase-Compara | ||||||
| CSP28.g10627 | Caenorhabditis panamensis | From_analysis | WormBase-Compara | ||||||
| CSP29.g2594 | Caenorhabditis becei | From_analysis | WormBase-Compara | ||||||
| CSP31.g16060 | Caenorhabditis uteleia | From_analysis | WormBase-Compara | ||||||
| CSP32.g202 | Caenorhabditis sulstoni | From_analysis | WormBase-Compara | ||||||
| CSP38.g10391 | Caenorhabditis quiockensis | From_analysis | WormBase-Compara | ||||||
| CSP39.g7225 | Caenorhabditis waitukubuli | From_analysis | WormBase-Compara | ||||||
| CSP40.g13991 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||||
| Cang_2012_03_13_00002.g177 | Caenorhabditis angaria | From_analysis | WormBase-Compara | ||||||
| Cni-F22F4.5 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
| Csp11.Scaffold626.g6542 | Caenorhabditis tropicalis | From_analysis | WormBase-Compara | ||||||
| Csp5_scaffold_00083.g3718 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||||
| FL83_00431 | Caenorhabditis latens | From_analysis | WormBase-Compara | ||||||
| GCK72_024500 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
| Sp34_X0231800 | Caenorhabditis inopinata | From_analysis | WormBase-Compara | ||||||
| chrX_pilon.g19149 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Enriched in several structures, including ABalppappa; ABarappppa; ABplaapaap; anterior ganglion (post); and neurons based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including daf-2; skn-1; and glp-1 based on RNA-seq; tiling array; and microarray studies. Is affected by thirteen chemicals including Tunicamycin; sodium arsenite; and Zidovudine based on microarray and RNA-seq studies. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F22F4.5 | |||||||
| Corresponding_transcript | F22F4.5.1 | ||||||||
| Associated_feature | WBsf718601 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00031291 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Expr1020317 | ||||||||
| Expr1149276 | |||||||||
| Expr2002878 | |||||||||
| Expr2021096 | |||||||||
| Drives_construct | WBCnstr00027075 | ||||||||
| Construct_product | WBCnstr00027075 | ||||||||
| Microarray_results (14) | |||||||||
| Expression_cluster (151) | |||||||||
| Map_info | Positive | Positive_clone | F22F4 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | X | -3.94573 | |||||||
| Method | Gene |
