WormBase Tree Display for Gene: WBGene00017621
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| WBGene00017621 | SMap | S_parent | Sequence | F20A1 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | txt-17 | Person_evidence | WBPerson19237 | |||||
| WBPerson260 | |||||||||
| Sequence_name | F20A1.10 | ||||||||
| Molecular_name | F20A1.10 | ||||||||
| F20A1.10.1 | |||||||||
| CE07100 | |||||||||
| Other_name | spig-2 | Person_evidence | WBPerson260 | ||||||
| CELE_F20A1.10 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | txt-17 | ||||||||
| DB_info | Database | AceView | gene | 5H534 | |||||
| WormQTL | gene | WBGene00017621 | |||||||
| WormFlux | gene | WBGene00017621 | |||||||
| NDB | locus_tag | CELE_F20A1.10 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00017621|UniProtKB=Q19616 | |||||||
| family | PTHR33272 | ||||||||
| NCBI | gene | 184707 | |||||||
| RefSeq | protein | NM_072387.6 | |||||||
| TREEFAM | TREEFAM_ID | TF318907 | |||||||
| TrEMBL | UniProtAcc | Q19616 | |||||||
| UniProt_GCRP | UniProtAcc | Q19616 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:59 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 28 Jan 2020 11:43:42 | WBPerson1983 | Name_change | CGC_name | txt-17 | ||||
| 3 | 12 Jan 2023 20:48:33 | WBPerson51134 | Name_change | CGC_name | txt-17 | ||||
| Other_name | spig-2 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | txt | ||||||||
| Allele (16) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (37) | |||||||||
| Paralog (18) | |||||||||
| Structured_description | Automated_description | Enriched in PLM; dopaminergic neurons; intestine; neuronal sheath cell; and in male based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray and RNA-seq studies. Is affected by sixteen chemicals including rotenone; D-glucose; and Cry5B based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Domain of unknown function (DUF4473) and Protein of unknown function DUF4473. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F20A1.10 | |||||||
| Corresponding_transcript | F20A1.10.1 | ||||||||
| Other_sequence | CJC02177_1 | ||||||||
| CRC02288_1 | |||||||||
| CSC00902_1 | |||||||||
| FD517752.1 | |||||||||
| CJC16731_1 | |||||||||
| FD514723.1 | |||||||||
| CJC04784_1 | |||||||||
| Associated_feature | WBsf652752 | ||||||||
| WBsf233898 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00082383 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00031148 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00082694 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00045055 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00013583 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1025027 | ||||||||
| Expr1149015 | |||||||||
| Expr2002766 | |||||||||
| Expr2020983 | |||||||||
| Drives_construct | WBCnstr00027152 | ||||||||
| Construct_product | WBCnstr00027152 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (200) | |||||||||
| Interaction (33) | |||||||||
| Map_info | Positive | Positive_clone | F20A1 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | V | 0.501413 | |||||||
| Method | Gene |
