WormBase Tree Display for Gene: WBGene00017488

WBGene00017488 SMap: S_parent: Sequence: F15E6
  Identity: Version: 2
    Name: CGC_name: dct-7 Paper_evidence: WBPaper00031095
          Person_evidence: WBPerson1157
      Sequence_name: F15E6.8
      Molecular_name: F15E6.8
        F15E6.8.1
        CE16997
      Other_name: CELE_F15E6.8 Accession_evidence: NDB BX284604
      Public_name: dct-7
    DB_info: Database: AceView gene 4F54
        WormQTL gene WBGene00017488
        WormFlux gene WBGene00017488
        NDB locus_tag CELE_F15E6.8
        NCBI gene 184536
        RefSeq protein NM_068133.3
        TrEMBL UniProtAcc O44494
        UniProt_GCRP UniProtAcc O44494
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:58 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 08 Nov 2007 16:33:50 WBPerson2970 Name_change: CGC_name: dct-7
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: dct
    Allele: WBVar01481747
      WBVar02003833
      WBVar01499790
      WBVar01499800
      WBVar00423070
      WBVar00423071
      WBVar01499633
      WBVar01499833
      WBVar01499839
      WBVar00903883
    RNASeq_FPKM (74)
    Ortholog: WBGene00082355 Caenorhabditis remanei From_analysis: OMA
      WBGene00082361 Caenorhabditis remanei From_analysis: OMA
            WormBase-Compara
      WBGene00082358 Caenorhabditis remanei From_analysis: OMA
      WBGene00082357 Caenorhabditis remanei From_analysis: OMA
      FL83_17070 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_015282 Caenorhabditis remanei From_analysis: WormBase-Compara
      chrIV_pilon.g10168 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00074107 Caenorhabditis remanei From_analysis: WormBase-Compara
    Paralog: WBGene00017485 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00044292 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00044472 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray and RNA-seq studies. Is affected by nineteen chemicals including methylmercuric chloride; Tunicamycin; and multi-walled carbon nanotube based on microarray and RNA-seq studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F15E6.8
    Corresponding_transcript: F15E6.8.1
  Experimental_info: RNAi_result: WBRNAi00070087 Inferred_automatically: RNAi_primary
      WBRNAi00013386 Inferred_automatically: RNAi_primary
      WBRNAi00044749 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1022832
      Expr1148714
      Expr2010821
      Expr2029058
    Drives_construct: WBCnstr00027258
    Construct_product: WBCnstr00027258
    Microarray_results (16)
    Expression_cluster: WBPaper00032031:DConiospora_downregulated_OligoArray_24h
      WBPaper00032528:L3_depleted
      WBPaper00033444:BacteriaDiet_regulated
      WBPaper00037849:sam-10(js94)_upregulated
      WBPaper00038438:D.coniospora_12hr_upregulated_RNAseq
      WBPaper00038438:E.faecalis_24hr_downregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_downregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_downregulated_TilingArray
      WBPaper00038438:S.marcescens_24hr_downregulated_RNAseq
      WBPaper00038438:S.marcescens_24hr_downregulated_TilingArray
      WBPaper00044316:CH3HgCl_7.5uM_downregulated
      WBPaper00044736:oscillating_dev_expression
      WBPaper00045390:tunicamycin_downregulated
      WBPaper00045390:ubc-9(RNAi)_downregulated
      WBPaper00045571:germline-ablation_upregulated
      WBPaper00045774:clk-1_upregulated
      WBPaper00046887:WNT-target
      WBPaper00049018:ham-3(RNAi)_downregulated
      WBPaper00049018:swsn-2.2(RNAi)_downregulated
      WBPaper00049368:daf-2(e1370)_downregulated
      WBPaper00049377:MWCNT_downregulated
      WBPaper00049736:daf-2(e1370)_upregulated_15deg-then-25deg(12hr)
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050712:RC301_vs_DA650_4h-PA_upregulated
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050801:DAF-12_dauer_regulome
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00052856:Cadmium_regulated
      WBPaper00053302:stavudine_24h_regulated
      WBPaper00053318:Aging_upregulated_mRNA_N2
      WBPaper00053318:mir-71(n4115)_upregulated_mRNA
      WBPaper00053810:daf-2(e1370)_upregulated
      WBPaper00053810:nuo-6(qm200)_upregulated
      WBPaper00053888:drh-3(rrr2)_upregulated
      WBPaper00054796:cav-1(RNAi)_upregulated
      WBPaper00055013:hmg-3(bar24)_upregulated
      WBPaper00055049:S.gordonii_upregulated
      WBPaper00055060:flr-1(RNAi)_downregulated
      WBPaper00055354:Psora-Allantoin_downregulated
      WBPaper00055354:Psora_downregulated
      WBPaper00055354:Rapamycin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Metformin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_downregulated
      WBPaper00055354:Rapamycin-Rifampicin_downregulated
      WBPaper00055354:Rapamycin_downregulated
      WBPaper00055354:Rifampicin-Psora_downregulated
      WBPaper00055354:Rifampicin_downregulated
      WBPaper00055386:eat-2(ad465)_downregulated
      WBPaper00055626:pry-1(mu38)_upregulated
      WBPaper00055827:pfd-6(gk493446)_upregulated
      WBPaper00055944:C.butyricum_vs_OP50_downregulated
      WBPaper00056039:ptl-1(ok621)_upregulated
      WBPaper00056169:rrf-3(pk1426)_downregulated_L3
      WBPaper00056169:rrf-3(pk1426)_downregulated_L4
      WBPaper00056275:P.aeruginosa_downregulated
      WBPaper00056290:hsp-6(mg585)_upregulated
      WBPaper00056290:mdt-15(mg584)_upregulated
      WBPaper00056443:DietaryRestriction_downregulated
      WBPaper00056443:sek-1(km4)_downregulated
      WBPaper00056471:S.aureus-4h_upregulated_N2
      WBPaper00057068:Cadmium_upregulated
      WBPaper00057068:ints-4(RNAi)_downregulated_Cadmium
      WBPaper00057265:metaformin_downregulated_OP50-MR
      WBPaper00057288:Cold_downregulated_transcript
      WBPaper00058711:skn-1(lax188)_downregulated
      WBPaper00058711:wdr-5(ok1417)_upregulated
      WBPaper00058725:sftb-1(cer39)_downregulated
      WBPaper00058955:heatshock_upregulated_CE
      WBPaper00058958:10mGy-irradiation-72h_downregulated
      WBPaper00058958:100mGy-irradiation-72h_downregulated
      WBPaper00059117:B.subtilis_upregulated
      WBPaper00059421:daf-1(m40);daf-3(mgDf90)_downregulated
      WBPaper00059527:lsm-1_upregulated_L1
      WBPaper00059895:wounding_upregulated
      WBPaper00059987:Wounding_upregulated
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
      WBPaper00060399:pqm-1(ok485)_downregulated_CoCl2_6hr
      WBPaper00060434:pH4.33_vs_pH6.33_uprgulated
      WBPaper00060661:sensory-neuron_depleted
      WBPaper00060811:L1_vs_adult_downregulated_neural
      WBPaper00060871:M.humicola-infection_48h_regulated
      WBPaper00061081:E.faecalis_downregulated_N2
      WBPaper00061081:E.faecalis_downregulated_skpo-1(ok1640)
      WBPaper00061341:28C_24h_upregulated
      WBPaper00061390:daf-22(ok693)_ascarosides_downregulated
      WBPaper00061424:Diet_MYb120_upregulated
      WBPaper00061424:Diet_MYb131_upregulated
      WBPaper00061527:W01F3.2_1554-Y106G6D.8
      WBPaper00061530:nhr-49(e2144)_upregulated
      WBPaper00061753:csr-1(tor159)_downregulated_20C
      WBPaper00061800:miR-85(n4117)_upregulated_20C
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062354:H.zoospora_6h_regulated
      WBPaper00063926:chd-7(gk290)_upregulated
      WBPaper00064473:ets-4(rrr16)_downregulated
      WBPaper00064494:postdauer_upregulated_WholeAnimal
      WBPaper00064532:pals-25(jy111)_downregulated
      WBPaper00064716:paraquat_downregulated
      WBPaper00064871:PA14_upregulated_AWA
      WBPaper00064999:miR-229-64-65-66_downregulated
      WBPaper00065005:sams-3(RNAi)_upregulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065288:mdt-15(tm2182)_downregulated
      WBPaper00065392:Lb.plantarum_downregulated
      WBPaper00065392:Lb.reuteri_downregulated
      WBPaper00065392:Lb.rhamnosus_downregulated
      WBPaper00065392:P.pentosaceus_downregulated
      WBPaper00065581:hpk-1(pk1393)_downregulated
      WBPaper00065841:2_0
      WBPaper00065975:P-body_vs_WholeAnimal_depleted
      WBPaper00065993:glp-1(e2141)_upregulated
      WBPaper00065993:hlh-30(RNAi)-neuron_downregulated
      WBPaper00065995:M.humicola-extract_upregulated_old-1(ok1273)
      WBPaper00066062:xrep-4(lax137)_upregulated
      WBPaper00066118:cyclobutrifluram_downregulated
      WBPaper00066146:germline-inx-14(RNAi)_upregulated_PA14
      cgc4489_group_12
      WBPaper00026929:Resveratrol_regulated_N2
      WBPaper00029437:dcr-1_upregulated
      WBPaper00030985:Enterococcus_faecalis_downregulated
      WBPaper00030985:Photorhabdus_luminescens_downregulated
      WBPaper00032062:age_regulated_genes
      WBPaper00033101:spr-5_regulated
      WBPaper00034661:AgNPs_upregulated
      WBPaper00035873:dpy-9_regulated
      WBPaper00035873:dpy-10_regulated
      WBPaper00035873:osm-7_regulated
      WBPaper00035873:osm-8_regulated
      WBPaper00035873:osm-11_regulated
      WBPaper00035873:osmotically_regulated
      WBPaper00036130:mir-243_up_regulated
      WBPaper00036286:Pattern_F
      WBPaper00036375:depleted_in_PVD_OLL
      WBPaper00037695:CC_3-day
      WBPaper00038172:crh-1null_up_regulated
      WBPaper00038172:tax-6null_up_regulated
      WBPaper00040184:hcf-1nc_sir-2.1nc_daf-2up
      WBPaper00040823:alg-1(gk214)_upregulated
      WBPaper00040858:eQTL_age_regulated_developing
      WBPaper00040858:eQTL_regulated_developing
      WBPaper00041002:HF_11d_0.2mM_Up
      WBPaper00041174:environmental
      WBPaper00041174:environmental_prime
      WBPaper00041606:CE_S.marcescens_regulated
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041609:hpl-1_hpl-2_downregulated
      WBPaper00041960:N2_fasting_upregulated_9hto12h
      WBPaper00041960:N2_fasting_upregulated_anytime
      WBPaper00042128:gei-8(ok1671)_upregulated
      WBPaper00042331:a-SWCNTs_upregulated
      WBPaper00044013:nasp-1_downregulated
      WBPaper00045263:nuo-6(qm200)_upregulated
      WBPaper00046083:oga-1(ok1207)_OP50_downregulated
      WBPaper00046083:pmk-1(km25)_OP50_downregulated
      WBPaper00046548:dafachronic-acid_upregulated
      WBPaper00049311:AgNO3_regulated
      WBPaper00050520:lagr-1(gk327);hyl-1(ok976)_upregulated
      WBPaper00050767:Octopamine_induced
      WBPaper00051387:Triclosan_upregulated
      WBPaper00057098:SiO2-nanoparticles_upregulated
      [cgc5976]:class_1
      [cgc6390]:male_soma-enriched
    Interaction (62)
  Map_info: Map: IV Position: 0.120186 Error: 0.006608
    Positive: Positive_clone: F15E6 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00031095
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene