WormBase Tree Display for Gene: WBGene00017408
expand all nodes | collapse all nodes | view schema
| WBGene00017408 | SMap | S_parent | Sequence | F12E12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | sdz-11 | Paper_evidence | WBPaper00024645 | |||||
| Person_evidence | WBPerson374 | ||||||||
| Sequence_name | F12E12.7 | ||||||||
| Molecular_name | F12E12.7 | ||||||||
| F12E12.7.1 | |||||||||
| CE39489 | |||||||||
| Other_name | fbxb-89 | Person_evidence | WBPerson655 | ||||||
| CELE_F12E12.7 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | sdz-11 | ||||||||
| DB_info | Database | AceView | gene | 2E40 | |||||
| WormQTL | gene | WBGene00017408 | |||||||
| WormFlux | gene | WBGene00017408 | |||||||
| NDB | locus_tag | CELE_F12E12.7 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00017408|UniProtKB=Q2V081 | |||||||
| family | PTHR22899 | ||||||||
| NCBI | gene | 173719 | |||||||
| RefSeq | protein | NM_062239.3 | |||||||
| TrEMBL | UniProtAcc | Q2V081 | |||||||
| UniProt_GCRP | UniProtAcc | Q2V081 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 19 Aug 2005 17:08:06 | WBPerson2970 | Name_change | CGC_name | sdz-11 | ||||
| 3 | 13 Dec 2005 13:48:42 | WBPerson2970 | Name_change | Other_name | fbxb-89 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | sdz | ||||||||
| Allele (32) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (36) | |||||||||
| Paralog (143) | |||||||||
| Structured_description | Automated_description | Enriched in several structures, including ABalaaaarl; ABalaaaarr; ABalaapppp; ABaraapapaa; and ABaraapppaa based on single-cell RNA-seq studies. Is affected by several genes including daf-2; eat-2; and clk-1 based on microarray and RNA-seq studies. Is affected by ten chemicals including hydrogen sulfide; methylmercuric chloride; and stavudine based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: F-box associated and F-box associated domain, type 2. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F12E12.7 | |||||||
| Corresponding_CDS_history | F12E12.7:wp152 | ||||||||
| Corresponding_transcript | F12E12.7.1 | ||||||||
| Associated_feature | WBsf649981 | ||||||||
| WBsf649982 | |||||||||
| WBsf987369 | |||||||||
| WBsf987370 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00044444 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Expr1037486 | ||||||||
| Expr1148390 | |||||||||
| Expr2015670 | |||||||||
| Expr2033903 | |||||||||
| Drives_construct | WBCnstr00027318 | ||||||||
| Construct_product | WBCnstr00027318 | ||||||||
| Microarray_results | A_12_P143455 | ||||||||
| A_12_P143456 | |||||||||
| GPL19516_CGZ0015743 | |||||||||
| GPL21109_F12E12.7 | |||||||||
| GPL8304_CE_WBGene00017408_A | |||||||||
| GPL8673_F12E12_7P00056 | |||||||||
| GPL8673_F12E12_7P00216 | |||||||||
| GPL8673_F12E12_7P00595 | |||||||||
| Expression_cluster (66) | |||||||||
| Interaction (27) | |||||||||
| Map_info | Map | II | Position | -6.21288 | Error | 0.000442 | |||
| Positive | Positive_clone | F12E12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
