WormBase Tree Display for Gene: WBGene00017349
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| WBGene00017349 | SMap | S_parent | Sequence | F10E7 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | farl-11 | Person_evidence | WBPerson3760 | |||||
| WBPerson75 | |||||||||
| Sequence_name | F10E7.8 | ||||||||
| Molecular_name (9) | |||||||||
| Other_name | CELE_F10E7.8 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | farl-11 | ||||||||
| DB_info | Database | AceView | gene | 2H392 | |||||
| WormQTL | gene | WBGene00017349 | |||||||
| WormFlux | gene | WBGene00017349 | |||||||
| NDB | locus_tag | CELE_F10E7.8 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00017349|UniProtKB=A0A1D3PCL0 | |||||||
| family | PTHR13239 | ||||||||
| NCBI | gene | 174165 | |||||||
| RefSeq | protein | NM_063066.9 | |||||||
| NM_001346631.3 | |||||||||
| NM_001346630.2 | |||||||||
| TrEMBL | UniProtAcc | A0A1D3PD01 | |||||||
| A0A1D3PCL0 | |||||||||
| Q19300 | |||||||||
| UniProt_GCRP | UniProtAcc | A0A1D3PCL0 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 18 Apr 2008 13:26:44 | WBPerson2970 | Name_change | CGC_name | farl-11 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | farl | ||||||||
| Allele (35) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00002478 | ||||||||
| 00002479 | |||||||||
| 00064269 | |||||||||
| 00064270 | |||||||||
| 00064271 | |||||||||
| 00064272 | |||||||||
| 00064273 | |||||||||
| Contained_in_operon | CEOP2288 | ||||||||
| Ortholog (39) | |||||||||
| Structured_description | Concise_description | farl-11 is an ortholog of human STRIP2 (striatin interacting protein 2) and STRIP1 (striatin interacting protein 1); FARL-11 is required for normal ER dynamics and the membrane localization of GLP-1 in the germline; translation of farl-11 mRNA in the mitotic germline is promoted by PUF-8; FARL-11::GFP expressed under the endogenous promoter and 3' UTR localizes to endoplasmic reticulum and the nuclear membrane in the germline and embryos. | Paper_evidence | WBPaper00049965 | |||||
| Person_evidence | WBPerson2530 | ||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 15 Dec 2016 00:00:00 | ||||||||
| Automated_description | Involved in endoplasmic reticulum organization; epithelial tube morphogenesis; and positive regulation of endocytic recycling. Located in endoplasmic reticulum. Expressed in germ line. Is an ortholog of human STRIP1 (striatin interacting protein 1) and STRIP2 (striatin interacting protein 2). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F10E7.8a | |||||||
| F10E7.8b | |||||||||
| F10E7.8c | |||||||||
| Corresponding_CDS_history | F10E7.8:wp203 | ||||||||
| Corresponding_transcript | F10E7.8a.1 | ||||||||
| F10E7.8b.1 | |||||||||
| F10E7.8c.1 | |||||||||
| Other_sequence (56) | |||||||||
| Associated_feature (11) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00022322 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00076290 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00044263 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr4805 | ||||||||
| Expr13023 | |||||||||
| Expr1022554 | |||||||||
| Expr1037459 | |||||||||
| Expr1148221 | |||||||||
| Expr2011429 | |||||||||
| Expr2029667 | |||||||||
| Drives_construct | WBCnstr00027366 | ||||||||
| WBCnstr00038374 | |||||||||
| Construct_product | WBCnstr00001417 | ||||||||
| WBCnstr00027366 | |||||||||
| WBCnstr00038374 | |||||||||
| Microarray_results | SMD_F10E7.8 | ||||||||
| 173590_at | |||||||||
| 183396_s_at | |||||||||
| A_12_P101698 | |||||||||
| Aff_F10E7.8 | |||||||||
| GPL13394_WBGene00017349 | |||||||||
| GPL13914_F10E7.8 | |||||||||
| GPL14144_F10E7.8_2418-2477_0.898_21_C | |||||||||
| GPL14144_F10E7.8_2514-2573_0.932_7_B | |||||||||
| GPL14144_F10E7.8_2804-2863_0.939_6_A | |||||||||
| GPL19516_CGZ0015362 | |||||||||
| GPL21109_F10E7.8 | |||||||||
| GPL3518_CE04363 | |||||||||
| GPL8304_CE_WBGene00017349_A | |||||||||
| GPL8673_F10E7_8P01843 | |||||||||
| GPL8673_F10E7_8P02383 | |||||||||
| GPL8673_F10E7_8P02612 | |||||||||
| GPL9450_F10E7.8 | |||||||||
| cea2.p.35943 | |||||||||
| Expression_cluster (125) | |||||||||
| Interaction (57) | |||||||||
| Map_info | Map | II | Position | 0.494201 | Error | 0.00019 | |||
| Positive | Positive_clone | F10E7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00030897 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00047481 | |||||||||
| WBPaper00048228 | |||||||||
| WBPaper00049965 | |||||||||
| WBPaper00052206 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00062623 | |||||||||
| WBPaper00063115 | |||||||||
| WBPaper00065585 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
