WormBase Tree Display for Gene: WBGene00017313

WBGene00017313 SMap: S_parent: Sequence: F09G2
  Identity: Version: 2
    Name: CGC_name: cpsf-2 Person_evidence: WBPerson71
      Sequence_name: F09G2.4
      Molecular_name: F09G2.4
        F09G2.4.1
        CE09299
      Other_name: CELE_F09G2.4 Accession_evidence: NDB BX284605
      Public_name: cpsf-2
    DB_info: Database: AceView gene 5H661
        WormQTL gene WBGene00017313
        WormFlux gene WBGene00017313
        NDB locus_tag CELE_F09G2.4
        Panther gene CAEEL|WormBase=WBGene00017313|UniProtKB=O17403
          family PTHR45922
        NCBI gene 179103
        RefSeq protein NM_072421.5
        SwissProt UniProtAcc O17403
        TREEFAM TREEFAM_ID TF106131
        UniProt_GCRP UniProtAcc O17403
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:58 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 07 Jan 2008 15:11:50 WBPerson2970 Name_change: CGC_name: cpsf-2
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: cpsf
    Allele (38)
    Strain: WBStrain00003604
      WBStrain00051450
    RNASeq_FPKM (74)
    GO_annotation (15)
    Ortholog (35)
    Paralog: WBGene00008642 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00013460 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00017608 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable RNA binding activity. Predicted to be involved in mRNA 3'-end processing by stem-loop binding activity and cleavage and mRNA polyadenylation. Predicted to be located in nucleus. Predicted to be part of mRNA cleavage and polyadenylation specificity factor complex. Is an ortholog of human CPSF2 (cleavage and polyadenylation specific factor 2). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F09G2.4
    Corresponding_transcript: F09G2.4.1
    Other_sequence (18)
    Associated_feature: WBsf646923
      WBsf661416
      WBsf1000441
      WBsf1019903
      WBsf231945
      WBsf231946
  Experimental_info: RNAi_result (14)
    Expr_pattern: Expr5705
      Expr1019008
      Expr1037443
      Expr1148136
      Expr2010511
      Expr2028751
    Drives_construct: WBCnstr00004054
      WBCnstr00027397
    Construct_product: WBCnstr00027397
    Microarray_results (19)
    Expression_cluster (111)
    Interaction (162)
  Map_info: Map: V Position: 0.625902 Error: 0.001641
    Positive: Positive_clone: F09G2 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00006292
    WBPaper00032289
    WBPaper00036363
    WBPaper00038491
    WBPaper00046460
    WBPaper00048493
    WBPaper00055090
    WBPaper00058884
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene