WormBase Tree Display for Gene: WBGene00017251
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WBGene00017251 | SMap | S_parent | Sequence | F08D12 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | fbxb | ||||||
Allele (41) | |||||||
RNASeq_FPKM (74) | |||||||
Ortholog (25) | |||||||
Paralog (143) | |||||||
Structured_description | Concise_description | This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function. | Paper_evidence | WBPaper00012854 | |||
Curator_confirmed | WBPerson567 | ||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||
Automated_description | Enriched in several structures, including ABalaaaala; ABalaaaarl; ABalaaaarr; ABalaapaaa; and neurons based on tiling array and single-cell RNA-seq studies. Is affected by several genes including daf-2; eat-2; and tph-1 based on microarray and RNA-seq studies. Is affected by nineteen chemicals including hydrogen sulfide; methylmercuric chloride; and Mercuric Chloride based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: F-box domain; F-box associated; and F-box associated domain, type 2. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | F08D12.8 | |||||
Corresponding_transcript | F08D12.8.1 | ||||||
Other_sequence | RS07064 | ||||||
ES409493.1 | |||||||
Associated_feature | WBsf649941 | ||||||
Experimental_info | RNAi_result | WBRNAi00043996 | Inferred_automatically | RNAi_primary | |||
WBRNAi00030647 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00012886 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00103253 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1017693 | ||||||
Expr1037408 | |||||||
Expr1147967 | |||||||
Expr2011600 | |||||||
Expr2029839 | |||||||
Drives_construct | WBCnstr00027454 | ||||||
Construct_product | WBCnstr00027454 | ||||||
Microarray_results (15) | |||||||
Expression_cluster (124) | |||||||
Interaction (78) | |||||||
Map_info | Map | II | Position | -11.6342 | Error | 0.019532 | |
Positive | Positive_clone | F08D12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00012854 | ||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |