WormBase Tree Display for Gene: WBGene00017238
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| WBGene00017238 | SMap | S_parent | Sequence | F08B4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | snrp-3 | |||||||
| Sequence_name | F08B4.7 | ||||||||
| Molecular_name | F08B4.7 | ||||||||
| F08B4.7.1 | |||||||||
| CE09232 | |||||||||
| Other_name | CELE_F08B4.7 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | snrp-3 | ||||||||
| DB_info | Database | AceView | gene | 4J452 | |||||
| WormQTL | gene | WBGene00017238 | |||||||
| WormFlux | gene | WBGene00017238 | |||||||
| NDB | locus_tag | CELE_F08B4.7 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00017238|UniProtKB=P90815 | |||||||
| family | PTHR31148 | ||||||||
| NCBI | gene | 177674 | |||||||
| RefSeq | protein | NM_001383150.2 | |||||||
| SwissProt | UniProtAcc | P90815 | |||||||
| TREEFAM | TREEFAM_ID | TF313578 | |||||||
| UniProt_GCRP | UniProtAcc | P90815 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 11 Mar 2021 09:37:10 | WBPerson1983 | Name_change | CGC_name | snrp-3 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | snrp | ||||||||
| Allele (25) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (21) | |||||||||
| Contained_in_operon | CEOP4296 | ||||||||
| Ortholog (35) | |||||||||
| Structured_description | Automated_description | Predicted to enable pre-mRNA 5'-splice site binding activity. Predicted to be involved in mRNA 5'-splice site recognition. Predicted to be located in nucleus. Predicted to be part of U1 snRNP. Human ortholog(s) of this gene implicated in mixed connective tissue disease and systemic lupus erythematosus. Is an ortholog of human SNRPC (small nuclear ribonucleoprotein polypeptide C). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:9074 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11157) | ||||
| DOID:65 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11157) | ||||||
| DOID:3492 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11157) | ||||||
| Molecular_info | Corresponding_CDS | F08B4.7 | |||||||
| Corresponding_transcript | F08B4.7.1 | ||||||||
| Other_sequence (37) | |||||||||
| Associated_feature | WBsf652009 | ||||||||
| WBsf230451 | |||||||||
| WBsf230452 | |||||||||
| Experimental_info | RNAi_result (12) | ||||||||
| Expr_pattern | Expr1025925 | ||||||||
| Expr1037400 | |||||||||
| Expr1147946 | |||||||||
| Expr2002281 | |||||||||
| Expr2020500 | |||||||||
| Drives_construct | WBCnstr00027463 | ||||||||
| Construct_product | WBCnstr00027463 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (104) | |||||||||
| Interaction (95) | |||||||||
| Map_info | Map | IV | Position | 3.93159 | |||||
| Positive | Positive_clone | F08B4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
