WormBase Tree Display for Gene: WBGene00017070
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WBGene00017070 | SMap | S_parent | Sequence | D2096 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | praf-3 | Person_evidence | WBPerson7269 | |||||
Sequence_name | D2096.2 | ||||||||
Molecular_name | D2096.2a | ||||||||
D2096.2a.1 | |||||||||
CE29245 | |||||||||
D2096.2b | |||||||||
CE38496 | |||||||||
D2096.2b.1 | |||||||||
D2096.2b.2 | |||||||||
D2096.2b.3 | |||||||||
D2096.2b.4 | |||||||||
Other_name | CELE_D2096.2 | Accession_evidence | NDB | BX284604 | |||||
Public_name | praf-3 | ||||||||
DB_info | Database | WormQTL | gene | WBGene00017070 | |||||
WormFlux | gene | WBGene00017070 | |||||||
NDB | locus_tag | CELE_D2096.2 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00017070|UniProtKB=H2KZJ7 | |||||||
family | PTHR12859 | ||||||||
NCBI | gene | 177637 | |||||||
RefSeq | protein | NM_001027933.4 | |||||||
NM_001383143.1 | |||||||||
TREEFAM | TREEFAM_ID | TF105479 | |||||||
TrEMBL | UniProtAcc | Q4TTA9 | |||||||
H2KZJ7 | |||||||||
UniProt_GCRP | UniProtAcc | H2KZJ7 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 14 Nov 2007 09:16:54 | WBPerson2970 | Name_change | CGC_name | praf-3 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | praf | ||||||||
Allele (34) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00022345 | ||||||||
00022346 | |||||||||
00022347 | |||||||||
00022348 | |||||||||
00022349 | |||||||||
Ortholog (39) | |||||||||
Structured_description | Automated_description | Predicted to be located in membrane. Is an ortholog of human ARL6IP5 (ADP ribosylation factor like GTPase 6 interacting protein 5) and PRAF2 (PRA1 domain family member 2). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | D2096.2a | |||||||
D2096.2b | |||||||||
Corresponding_CDS_history | D2096.2:wp142 | ||||||||
Corresponding_transcript | D2096.2a.1 | ||||||||
D2096.2b.1 | |||||||||
D2096.2b.2 | |||||||||
D2096.2b.3 | |||||||||
D2096.2b.4 | |||||||||
Other_sequence (14) | |||||||||
Associated_feature | WBsf646161 | ||||||||
WBsf646162 | |||||||||
WBsf660400 | |||||||||
WBsf660401 | |||||||||
WBsf660402 | |||||||||
WBsf977192 | |||||||||
WBsf977193 | |||||||||
WBsf977194 | |||||||||
WBsf228673 | |||||||||
Experimental_info | RNAi_result | WBRNAi00024967 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00103240 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00027251 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00012605 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00030430 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00043527 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00012611 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00103241 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00024968 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00043535 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1016988 | ||||||||
Expr1037335 | |||||||||
Expr1147521 | |||||||||
Expr2015085 | |||||||||
Expr2033322 | |||||||||
Drives_construct | WBCnstr00027592 | ||||||||
Construct_product | WBCnstr00027592 | ||||||||
Microarray_results (29) | |||||||||
Expression_cluster (109) | |||||||||
Interaction (15) | |||||||||
Map_info | Map | IV | Position | 3.74406 | Error | 0.00428 | |||
Positive | Positive_clone | D2096 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference (2) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |