WormBase Tree Display for Gene: WBGene00017011
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| WBGene00017011 | SMap | S_parent | Sequence | D1007 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | eaf-1 | Person_evidence | WBPerson2977 | |||||
| Sequence_name | D1007.16 | ||||||||
| Molecular_name | D1007.16 | ||||||||
| D1007.16.1 | |||||||||
| CE40450 | |||||||||
| Other_name | CELE_D1007.16 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | eaf-1 | ||||||||
| DB_info | Database | AceView | gene | 1F171 | |||||
| WormQTL | gene | WBGene00017011 | |||||||
| WormFlux | gene | WBGene00017011 | |||||||
| NDB | locus_tag | CELE_D1007.16 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00017011|UniProtKB=Q9TXQ9 | |||||||
| family | PTHR15970 | ||||||||
| NCBI | gene | 172065 | |||||||
| RefSeq | protein | NM_001379866.3 | |||||||
| TREEFAM | TREEFAM_ID | TF320864 | |||||||
| TrEMBL | UniProtAcc | Q9TXQ9 | |||||||
| UniProt_GCRP | UniProtAcc | Q9TXQ9 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 19 Feb 2010 14:17:26 | WBPerson2970 | Name_change | CGC_name | eaf-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | eaf | ||||||||
| Allele (13) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00097213 | ||||||||
| 00097214 | |||||||||
| 00097215 | |||||||||
| 00097216 | |||||||||
| 00097217 | |||||||||
| 00097218 | |||||||||
| 00097219 | |||||||||
| 00097220 | |||||||||
| 00122509 | |||||||||
| 00122510 | |||||||||
| Contained_in_operon | CEOP1192 | ||||||||
| Ortholog (36) | |||||||||
| Structured_description | Automated_description | Predicted to enable transcription elongation factor activity. Predicted to be involved in transcription elongation by RNA polymerase II. Located in nucleus. Expressed in hypodermis; pharynx; tail; and vulva. Used to study cancer. Human ortholog(s) of this gene implicated in prostate cancer. Is an ortholog of human EAF1 (ELL associated factor 1) and EAF2 (ELL associated factor 2). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Experimental_model | DOID:162 | Homo sapiens | Paper_evidence | WBPaper00040146 | ||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 10 Aug 2023 00:00:00 | ||||||||
| Potential_model | DOID:10283 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:23115) | |||||
| Models_disease_in_annotation | WBDOannot00001402 | ||||||||
| Molecular_info | Corresponding_CDS | D1007.16 | |||||||
| Corresponding_CDS_history | D1007.16:wp165 | ||||||||
| Corresponding_transcript | D1007.16.1 | ||||||||
| Other_sequence (14) | |||||||||
| Associated_feature | WBsf643225 | ||||||||
| WBsf656237 | |||||||||
| WBsf217547 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00089552 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00117064 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00030308 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00043326 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr9668 | ||||||||
| Expr1026394 | |||||||||
| Expr1037309 | |||||||||
| Expr1147304 | |||||||||
| Expr2011145 | |||||||||
| Expr2029381 | |||||||||
| Drives_construct | WBCnstr00009358 | ||||||||
| Construct_product | WBCnstr00009358 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (102) | |||||||||
| Interaction | WBInteraction000113735 | ||||||||
| WBInteraction000505000 | |||||||||
| WBInteraction000505002 | |||||||||
| WBInteraction000505003 | |||||||||
| WBInteraction000505004 | |||||||||
| WBInteraction000517211 | |||||||||
| WBInteraction000517212 | |||||||||
| WBInteraction000525339 | |||||||||
| WBInteraction000547229 | |||||||||
| Map_info | Map | I | Position | -1.03815 | Error | 0.000663 | |||
| Positive | Positive_clone | D1007 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00040146 | |||||||||
| WBPaper00045125 | |||||||||
| WBPaper00046728 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00059863 | |||||||||
| WBPaper00064339 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
