WormBase Tree Display for Gene: WBGene00016992

WBGene00016992 SMap: S_parent: Sequence: CD4
  Identity: Version: 2
    Name: CGC_name: zhit-1 Person_evidence: WBPerson260
      Sequence_name: CD4.7
      Molecular_name: CD4.7a
        CD4.7a.1
        CE35262
        CD4.7b
        CE41883
        CD4.7b.1
      Other_name: CELE_CD4.7 Accession_evidence: NDB BX284605
      Public_name: zhit-1
    DB_info: Database: AceView gene 5G74
        WormQTL gene WBGene00016992
        WormFlux gene WBGene00016992
        NDB locus_tag CELE_CD4.7
        Panther gene CAEEL|WormBase=WBGene00016992|UniProtKB=A9D699
          family PTHR13093
        NCBI gene 183878
        RefSeq protein NM_001129422.3
            NM_072076.8
        TREEFAM TREEFAM_ID TF314330
        TrEMBL UniProtAcc A9D699
            O44161
        UniProt_GCRP UniProtAcc A9D699
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:58 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 30 Sep 2011 16:40:15 WBPerson2970 Name_change: CGC_name: zhit-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: zhit
    Allele (14)
    Strain: WBStrain00055408
    RNASeq_FPKM (74)
    GO_annotation: 00005484
      00005485
      00005486
      00122494
    Ortholog: WBGene00058910 Caenorhabditis remanei From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00030959 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            Inparanoid_8
            WormBase-Compara
      WBGene00135272 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00268224 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g2121 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g442 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g8954 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP29.g14187 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g18016 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g95 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP39.g21819 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g24618 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00038.g2143 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-zhit-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold460.g1471 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_02999.g28709 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_12021 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_017767 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g04219 Oscheius tipulae From_analysis: WormBase-Compara
      Sp34_50197100 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrV_pilon.g14273 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00238972 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00258384 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00287497 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000004505 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            OrthoFinder
            Panther
      FB:FBgn0031668 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-050417-272 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:21688 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1917353 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:2322870 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Structured_description: Automated_description: Predicted to enable nucleosome binding activity. Predicted to be involved in chromatin remodeling. Predicted to be located in nucleus. Predicted to be part of Swr1 complex. Is an ortholog of human ZNHIT1 (zinc finger HIT-type containing 1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CD4.7a
      CD4.7b
    Corresponding_CDS_history: CD4.7:wp106
      CD4.7:wp185
    Corresponding_transcript: CD4.7a.1
      CD4.7b.1
    Other_sequence (29)
    Associated_feature: WBsf652637
      WBsf1000037
      WBsf1019661
  Experimental_info: RNAi_result (11)
    Expr_pattern: Expr1012641
      Expr1037297
      Expr1147287
      Expr2018132
      Expr2036269
    Drives_construct: WBCnstr00027650
    Construct_product: WBCnstr00027650
    Microarray_results (24)
    Expression_cluster (120)
    Interaction (25)
  Map_info: Map: V Position: -1.35169 Error: 0.004436
    Positive: Positive_clone: CD4 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00027634
    WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene