WormBase Tree Display for Gene: WBGene00016979
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| WBGene00016979 | SMap | S_parent | Sequence | C56G2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | C56G2.4 | |||||||
| Molecular_name | C56G2.4 | ||||||||
| C56G2.4.1 | |||||||||
| CE30638 | |||||||||
| Other_name | CELE_C56G2.4 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | C56G2.4 | ||||||||
| DB_info | Database | AceView | gene | 3H425 | |||||
| WormQTL | gene | WBGene00016979 | |||||||
| WormFlux | gene | WBGene00016979 | |||||||
| NDB | locus_tag | CELE_C56G2.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00016979|UniProtKB=Q09288 | |||||||
| family | PTHR11362 | ||||||||
| NCBI | gene | 175894 | |||||||
| RefSeq | protein | NM_065984.6 | |||||||
| SwissProt | UniProtAcc | Q09288 | |||||||
| TREEFAM | TREEFAM_ID | TF315074 | |||||||
| UniProt_GCRP | UniProtAcc | Q09288 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (52) | |||||||||
| Strain | WBStrain00003354 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (32) | |||||||||
| Paralog | WBGene00013477 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WBGene00018218 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WBGene00021327 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| Structured_description | Automated_description | Enriched in interfacial epithelial cell; neurons; and ventral nerve cord based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-2; skn-1; and eat-2 based on microarray and RNA-seq studies. Is affected by fourteen chemicals including stavudine; Zidovudine; and Psoralens based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domain: PEBP-like superfamily. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C56G2.4 | |||||||
| Corresponding_transcript | C56G2.4.1 | ||||||||
| Other_sequence | HC04936 | ||||||||
| HCC06332_1 | |||||||||
| JI168613.1 | |||||||||
| Associated_feature | WBsf645260 | ||||||||
| WBsf659048 | |||||||||
| WBsf992718 | |||||||||
| WBsf992719 | |||||||||
| WBsf992720 | |||||||||
| WBsf992721 | |||||||||
| WBsf1015073 | |||||||||
| WBsf1015074 | |||||||||
| WBsf225085 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00005641 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00043287 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00012472 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram1014 | ||||||||
| Expr5600 | |||||||||
| Expr1018280 | |||||||||
| Expr1037289 | |||||||||
| Expr1147265 | |||||||||
| Expr2001983 | |||||||||
| Expr2020207 | |||||||||
| Drives_construct | WBCnstr00003825 | ||||||||
| WBCnstr00027660 | |||||||||
| Construct_product | WBCnstr00027660 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (154) | |||||||||
| Interaction (14) | |||||||||
| Map_info | Positive | Positive_clone | C56G2 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | III | -1.39079 | |||||||
| Method | Gene |
