WormBase Tree Display for Gene: WBGene00016974
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| WBGene00016974 | SMap | S_parent | Sequence | C56E6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | lron-15 | Person_evidence | WBPerson260 | |||||
| WBPerson637 | |||||||||
| Sequence_name | C56E6.6 | ||||||||
| Molecular_name | C56E6.6 | ||||||||
| C56E6.6.1 | |||||||||
| CE46222 | |||||||||
| Other_name | CELE_C56E6.6 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | lron-15 | ||||||||
| DB_info | Database | AceView | gene | 2G832 | |||||
| WormQTL | gene | WBGene00016974 | |||||||
| WormFlux | gene | WBGene00016974 | |||||||
| NDB | locus_tag | CELE_C56E6.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00016974|UniProtKB=Q18902 | |||||||
| family | PTHR45617 | ||||||||
| NCBI | gene | 174079 | |||||||
| RefSeq | protein | NM_062921.6 | |||||||
| TrEMBL | UniProtAcc | Q18902 | |||||||
| UniProt_GCRP | UniProtAcc | Q18902 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 02 Mar 2012 16:42:47 | WBPerson2970 | Name_change | CGC_name | lron-15 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | lron | ||||||||
| Allele | WBVar00094345 | Inferred_automatically | From strain object: RB2414 | ||||||
| WBVar01499702 | |||||||||
| WBVar02151440 | |||||||||
| WBVar02100924 | |||||||||
| WBVar01498435 | |||||||||
| WBVar00738716 | |||||||||
| WBVar00738717 | |||||||||
| WBVar00738718 | |||||||||
| WBVar00738719 | |||||||||
| WBVar01720131 | |||||||||
| WBVar00738720 | |||||||||
| WBVar00738721 | |||||||||
| WBVar00738722 | |||||||||
| WBVar00738723 | |||||||||
| WBVar00738724 | |||||||||
| WBVar00738725 | |||||||||
| WBVar00738726 | |||||||||
| WBVar00738727 | |||||||||
| WBVar00738728 | |||||||||
| WBVar00738729 | |||||||||
| WBVar00738730 | |||||||||
| WBVar00738731 | |||||||||
| WBVar00738732 | |||||||||
| WBVar00738733 | |||||||||
| WBVar00738734 | |||||||||
| WBVar00738735 | |||||||||
| WBVar00738736 | |||||||||
| WBVar00738737 | |||||||||
| WBVar00738738 | |||||||||
| WBVar00738739 | |||||||||
| WBVar00738740 | |||||||||
| WBVar00738741 | |||||||||
| WBVar00738742 | |||||||||
| WBVar00738743 | |||||||||
| WBVar01492217 | |||||||||
| WBVar01783778 | |||||||||
| WBVar00255862 | |||||||||
| WBVar02130117 | |||||||||
| WBVar02012101 | |||||||||
| WBVar00368433 | |||||||||
| WBVar00368434 | |||||||||
| WBVar00368435 | |||||||||
| WBVar00368436 | |||||||||
| WBVar00368437 | |||||||||
| WBVar00368438 | |||||||||
| WBVar00368439 | |||||||||
| WBVar01891714 | |||||||||
| WBVar01495085 | |||||||||
| Strain | WBStrain00033089 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (36) | |||||||||
| Paralog (11) | |||||||||
| Structured_description | Automated_description | Enriched in ADE sheath cell; head ganglion; muscle cell; and neurons based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including rrf-3; eat-2; and sir-2.1 based on microarray and RNA-seq studies. Is affected by eleven chemicals including 1-methylnicotinamide; stavudine; and Zidovudine based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Leucine-rich repeat; Leucine-rich repeat domain superfamily; Leucine rich repeat; and Leucine-rich repeat, typical subtype. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C56E6.6 | |||||||
| Corresponding_CDS_history | C56E6.6:wp130 | ||||||||
| C56E6.6:wp227 | |||||||||
| Corresponding_transcript | C56E6.6.1 | ||||||||
| Other_sequence | JI164988.1 | ||||||||
| Associated_feature | WBsf665621 | ||||||||
| WBsf988198 | |||||||||
| WBsf1012397 | |||||||||
| WBsf223195 | |||||||||
| WBsf223196 | |||||||||
| WBsf223197 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00030208 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00001815 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00043281 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00012468 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1025366 | ||||||||
| Expr1037285 | |||||||||
| Expr1147259 | |||||||||
| Expr2013273 | |||||||||
| Expr2031504 | |||||||||
| Drives_construct | WBCnstr00027665 | ||||||||
| Construct_product | WBCnstr00027665 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (148) | |||||||||
| Interaction | WBInteraction000170047 | ||||||||
| WBInteraction000193387 | |||||||||
| WBInteraction000407720 | |||||||||
| Map_info | Map | II | Position | -0.163286 | |||||
| Positive | Positive_clone | C56E6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00017947 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
