WormBase Tree Display for Gene: WBGene00016918
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| WBGene00016918 | SMap | S_parent | Sequence | C54E4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | test-1 | Person_evidence | WBPerson105 | |||||
| Sequence_name | C54E4.2 | ||||||||
| Molecular_name | C54E4.2a | ||||||||
| C54E4.2a.1 | |||||||||
| CE20611 | |||||||||
| C54E4.2c | |||||||||
| CE48553 | |||||||||
| C54E4.2c.1 | |||||||||
| Other_name | CELE_C54E4.2 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | test-1 | ||||||||
| DB_info | Database | AceView | gene | 4C909 | |||||
| WormQTL | gene | WBGene00016918 | |||||||
| WormFlux | gene | WBGene00016918 | |||||||
| NDB | locus_tag | CELE_C54E4.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00016918|UniProtKB=H2KZF8 | |||||||
| family | PTHR12352 | ||||||||
| NCBI | gene | 177010 | |||||||
| RefSeq | protein | NM_001027927.6 | |||||||
| NM_001380084.1 | |||||||||
| TrEMBL | UniProtAcc | O44466 | |||||||
| U4PLP4 | |||||||||
| UniProt_GCRP | UniProtAcc | O44466 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 05 Nov 2014 11:16:03 | WBPerson2970 | Name_change | CGC_name | test-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | test | ||||||||
| Allele (245) | |||||||||
| Strain | WBStrain00032011 | ||||||||
| WBStrain00037144 | |||||||||
| WBStrain00037172 | |||||||||
| WBStrain00054910 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00122414 | ||||||||
| Ortholog (38) | |||||||||
| Structured_description | Automated_description | Predicted to enable calcium ion binding activity. Human ortholog(s) of this gene implicated in hepatocellular carcinoma. Is an ortholog of human SPOCK1 (SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1); SPOCK2 (SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2); and SPOCK3 (SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:684 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11251) | ||||
| Molecular_info | Corresponding_CDS | C54E4.2a | |||||||
| C54E4.2c | |||||||||
| Corresponding_CDS_history | C54E4.2b:wp275 | ||||||||
| Corresponding_transcript | C54E4.2a.1 | ||||||||
| C54E4.2c.1 | |||||||||
| Other_sequence | EX537259.1 | ||||||||
| CB037307.1 | |||||||||
| JI466353.1 | |||||||||
| JO468992.1 | |||||||||
| JI173202.1 | |||||||||
| FG976014.1 | |||||||||
| EX010143.1 | |||||||||
| EX546524.1 | |||||||||
| CSC00800_1 | |||||||||
| EX559043.1 | |||||||||
| CB039128.1 | |||||||||
| ASC00869_1 | |||||||||
| Oden_isotig08357 | |||||||||
| FG587998.1 | |||||||||
| ACC14734_1 | |||||||||
| DIC00810_1 | |||||||||
| PT03986 | |||||||||
| TDC00490_1 | |||||||||
| HBC01289_1 | |||||||||
| EX548429.1 | |||||||||
| FM207716.1 | |||||||||
| BMC05030_1 | |||||||||
| DI00501 | |||||||||
| EW744399.1 | |||||||||
| Tcir_isotig18520 | |||||||||
| GO240018.1 | |||||||||
| FG973397.1 | |||||||||
| BF824648.1 | |||||||||
| ES741687.1 | |||||||||
| FD516190.1 | |||||||||
| Tcol_isotig11716 | |||||||||
| CB036752.1 | |||||||||
| CR09890 | |||||||||
| EX535443.1 | |||||||||
| FG973688.1 | |||||||||
| ES414007.1 | |||||||||
| DI00019 | |||||||||
| Oden_isotig08356 | |||||||||
| EX548335.1 | |||||||||
| CBC03236_1 | |||||||||
| Tcol_isotig11717 | |||||||||
| CJC01323_1 | |||||||||
| EX546655.1 | |||||||||
| CR01856 | |||||||||
| EV853957.1 | |||||||||
| PTC03711_1 | |||||||||
| OVC01662_1 | |||||||||
| DI00008 | |||||||||
| ACC19070_1 | |||||||||
| Acan_isotig10477 | |||||||||
| CRC04681_1 | |||||||||
| EX542287.1 | |||||||||
| Dviv_isotig17688 | |||||||||
| JI480825.1 | |||||||||
| DI00507 | |||||||||
| FG978593.1 | |||||||||
| CD203240.1 | |||||||||
| DVC02626_1 | |||||||||
| DIC00334_1 | |||||||||
| BMC11989_1 | |||||||||
| EX913949.1 | |||||||||
| AS04132 | |||||||||
| Oden_isotig08358 | |||||||||
| EX544343.1 | |||||||||
| CB036808.1 | |||||||||
| LSC01450_1 | |||||||||
| Dviv_isotig17687 | |||||||||
| GO240445.1 | |||||||||
| Associated_feature (11) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00012397 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00043155 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00089021 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00030146 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1020841 | ||||||||
| Expr1037260 | |||||||||
| Expr1147131 | |||||||||
| Expr2017375 | |||||||||
| Expr2035512 | |||||||||
| Microarray_results (27) | |||||||||
| Expression_cluster (193) | |||||||||
| Interaction (31) | |||||||||
| Map_info | Map | IV | Position | -9.82537 | |||||
| Positive | Positive_clone | C54E4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064099 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
