WormBase Tree Display for Gene: WBGene00016906
expand all nodes | collapse all nodes | view schema
| WBGene00016906 | SMap | S_parent | Sequence | C53D5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | C53D5.5 | |||||||
| Molecular_name | C53D5.5a | ||||||||
| C53D5.5a.1 | |||||||||
| CE23612 | |||||||||
| C53D5.5b | |||||||||
| CE49221 | |||||||||
| C53D5.5b.1 | |||||||||
| Other_name | CELE_C53D5.5 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | C53D5.5 | ||||||||
| DB_info | Database | AceView | gene | 1A778 | |||||
| 1A780 | |||||||||
| WormQTL | gene | WBGene00016906 | |||||||
| WormFlux | gene | WBGene00016906 | |||||||
| NDB | locus_tag | CELE_C53D5.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00016906|UniProtKB=Q9N5V4 | |||||||
| family | PTHR11686 | ||||||||
| NCBI | gene | 171619 | |||||||
| RefSeq | protein | NM_058313.7 | |||||||
| NM_001377821.2 | |||||||||
| TrEMBL | UniProtAcc | V6CLP9 | |||||||
| Q9N5V4 | |||||||||
| UniProt_GCRP | UniProtAcc | Q9N5V4 | |||||||
| OMIM | gene | 612346 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (100) | |||||||||
| Strain | WBStrain00031364 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00095621 | ||||||||
| 00095622 | |||||||||
| 00095623 | |||||||||
| 00095624 | |||||||||
| 00122403 | |||||||||
| 00122404 | |||||||||
| Ortholog (52) | |||||||||
| Paralog | WBGene00011393 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00012416 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00020590 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00022397 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00019204 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | The C53D5.5 gene encodes an ortholog of the human gene GAMMA-GLUTAMYLTRANSFERASE 1 (GGT1), which when mutated leads to glutathionuria (OMIM:231950). | Paper_evidence | WBPaper00004637 | |||||
| Curator_confirmed | WBPerson1823 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable glutathione hydrolase activity. Predicted to be involved in glutathione catabolic process. Predicted to be located in plasma membrane. Human ortholog(s) of this gene implicated in several diseases, including biliary atresia; diabetes mellitus (multiple); and liver disease (multiple). Is an ortholog of human GGT1 (gamma-glutamyltransferase 1) and GGT2P (gamma-glutamyltransferase 2, pseudogene). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model (12) | ||||||||
| Molecular_info | Corresponding_CDS | C53D5.5a | |||||||
| C53D5.5b | |||||||||
| Corresponding_transcript | C53D5.5a.1 | ||||||||
| C53D5.5b.1 | |||||||||
| Other_sequence (48) | |||||||||
| Associated_feature | WBsf648899 | ||||||||
| WBsf648900 | |||||||||
| WBsf982462 | |||||||||
| WBsf218885 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00117062 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00030117 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00072979 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00115495 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00043096 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00072980 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00115557 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00003215 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1010297 | ||||||||
| Expr1037255 | |||||||||
| Expr1147060 | |||||||||
| Expr2001894 | |||||||||
| Expr2020119 | |||||||||
| Drives_construct | WBCnstr00027712 | ||||||||
| Construct_product | WBCnstr00027712 | ||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (115) | |||||||||
| Interaction (68) | |||||||||
| Map_info | Positive | Positive_clone | C53D5 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | I | -19.0973 | |||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00042257 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00061547 | |||||||||
| WBPaper00064339 | |||||||||
| Method | Gene |
