WormBase Tree Display for Gene: WBGene00016894
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WBGene00016894 | SMap | S_parent | Sequence | C53B7 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | Sequence_name | C53B7.3 | |||||||
Molecular_name (12) | |||||||||
Other_name | CELE_C53B7.3 | Accession_evidence | NDB | BX284606 | |||||
Public_name | C53B7.3 | ||||||||
DB_info | Database | AceView | gene | XH463 | |||||
WormQTL | gene | WBGene00016894 | |||||||
WormFlux | gene | WBGene00016894 | |||||||
NDB | locus_tag | CELE_C53B7.3 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00016894|UniProtKB=H2KZE4 | |||||||
family | PTHR36519 | ||||||||
NCBI | gene | 180957 | |||||||
RefSeq | protein | NM_001392794.1 | |||||||
NM_001129648.5 | |||||||||
NM_076752.5 | |||||||||
NM_001129647.3 | |||||||||
TREEFAM | TREEFAM_ID | TF321019 | |||||||
TrEMBL | UniProtAcc | H2KZE4 | |||||||
H2KZE2 | |||||||||
A8WFK2 | |||||||||
H2KZE3 | |||||||||
UniProt_GCRP | UniProtAcc | H2KZE4 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Allele (22) | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog | WBGene00032154 | Caenorhabditis briggsae | From_analysis | Hillier-set | |||||
OrthoMCL | |||||||||
OMA | |||||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00051423 | Caenorhabditis remanei | From_analysis | OMA | ||||||
TreeFam | |||||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00156067 | Caenorhabditis brenneri | From_analysis | OMA | ||||||
TreeFam | |||||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00127305 | Caenorhabditis japonica | From_analysis | OMA | ||||||
TreeFam | |||||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
CBOVI.g3375 | Caenorhabditis bovis | From_analysis | WormBase-Compara | ||||||
CSP26.g14274 | Caenorhabditis zanzibari | From_analysis | WormBase-Compara | ||||||
CSP28.g11628 | Caenorhabditis panamensis | From_analysis | WormBase-Compara | ||||||
CSP29.g2757 | Caenorhabditis becei | From_analysis | WormBase-Compara | ||||||
CSP31.g20654 | Caenorhabditis uteleia | From_analysis | WormBase-Compara | ||||||
CSP32.g9222 | Caenorhabditis sulstoni | From_analysis | WormBase-Compara | ||||||
CSP39.g364 | Caenorhabditis waitukubuli | From_analysis | WormBase-Compara | ||||||
CSP40.g10874 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||||
Cni-C53B7.3 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
Csp11.Scaffold320.g810 | Caenorhabditis tropicalis | From_analysis | WormBase-Compara | ||||||
FL83_00282 | Caenorhabditis latens | From_analysis | WormBase-Compara | ||||||
GCK72_024659 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
Sp34_X0195100 | Caenorhabditis inopinata | From_analysis | WormBase-Compara | ||||||
chrX_pilon.g19310 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Paralog (11) | |||||||||
Structured_description | Automated_description | Enriched in several structures, including MSaaaaapa; head mesodermal cell; pharyngeal cell; pharyngeal-intestinal valve; and sensory neurons based on microarray; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray and RNA-seq studies. Is affected by eighteen chemicals including hydrogen sulfide; rotenone; and Cry5B based on microarray and RNA-seq studies. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C53B7.3a | |||||||
C53B7.3b | |||||||||
C53B7.3c | |||||||||
C53B7.3d | |||||||||
Corresponding_CDS_history | C53B7.3:wp184 | ||||||||
Corresponding_transcript | C53B7.3a.1 | ||||||||
C53B7.3b.1 | |||||||||
C53B7.3c.1 | |||||||||
C53B7.3d.1 | |||||||||
Other_sequence (14) | |||||||||
Associated_feature | WBsf648266 | ||||||||
WBsf235876 | |||||||||
WBsf235877 | |||||||||
Experimental_info | RNAi_result | WBRNAi00043079 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00030107 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00012350 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1026963 | ||||||||
Expr1147042 | |||||||||
Expr2001886 | |||||||||
Expr2020111 | |||||||||
Drives_construct | WBCnstr00027721 | ||||||||
Construct_product | WBCnstr00027721 | ||||||||
Microarray_results (24) | |||||||||
Expression_cluster (284) | |||||||||
Interaction (66) | |||||||||
Map_info | Positive | Positive_clone | C53B7 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
Interpolated_map_position | X | -2.33701 | |||||||
Method | Gene |