WormBase Tree Display for Gene: WBGene00016845

WBGene00016845 SMap: S_parent: Sequence: C50F7
  Identity: Version: 1
    Name: Sequence_name: C50F7.5
      Molecular_name: C50F7.5
        C50F7.5.1
        CE48081
      Other_name: CELE_C50F7.5 Accession_evidence: NDB BX284604
      Public_name: C50F7.5
    DB_info: Database: AceView gene 4I491
        WormQTL gene WBGene00016845
        WormFlux gene WBGene00016845
        NDB locus_tag CELE_C50F7.5
        NCBI gene 177554
        RefSeq protein NM_001380341.1
        TrEMBL UniProtAcc Q18751
        UniProt_GCRP UniProtAcc Q18751
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:58 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (14)
    RNASeq_FPKM (74)
    Ortholog: WBGene00059315 Caenorhabditis remanei From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00142640 Caenorhabditis brenneri From_analysis: OMA
      WBGene00144724 Caenorhabditis brenneri From_analysis: OMA
      WBGene00156074 Caenorhabditis brenneri From_analysis: OMA
      WBGene00147682 Caenorhabditis brenneri From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00157585 Caenorhabditis brenneri From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00027069 Caenorhabditis briggsae From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00121878 Caenorhabditis japonica From_analysis: Inparanoid_8
      CSP26.g7661 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g21606 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g7290 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP39.g2065 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g6629 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cni-C50F7.5 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Cnig_chr_IV.g14917 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g12777 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00368.g10268 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_19162 Caenorhabditis latens From_analysis: WormBase-Compara
      FL83_22533 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_014862 Caenorhabditis remanei From_analysis: WormBase-Compara
      chrIV_pilon.g10898 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00074691 Caenorhabditis remanei From_analysis: WormBase-Compara
    Structured_description: Automated_description: Enriched in cholinergic neurons; head mesodermal cell; intestine; mechanosensory neurons; and in male based on microarray; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; RNA-seq; and tiling array studies. Is affected by forty-three chemicals including 1-methylnicotinamide; rotenone; and Tunicamycin based on RNA-seq and microarray studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C50F7.5
    Corresponding_CDS_history: C50F7.5:wp234
    Corresponding_transcript: C50F7.5.1
    Other_sequence: FD516455.1
      CSC00446_1
      Tcir_isotig05535
      CBC07804_1
      CBC09204_1
      CBC01186_1
      CBC00564_1
    Associated_feature: WBsf228567
      WBsf228568
  Experimental_info: RNAi_result: WBRNAi00030055 Inferred_automatically: RNAi_primary
      WBRNAi00042957 Inferred_automatically: RNAi_primary
      WBRNAi00001134 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr10224
      Expr10225
      Expr10226
      Expr1022265
      Expr1037228
      Expr1146924
      Expr2001841
      Expr2020067
    Drives_construct: WBCnstr00015192
      WBCnstr00016508
    Microarray_results: SMD_C50F7.5
      183381_at
      A_12_P120082
      Aff_C50F7.5
      GPL13394_WBGene00016845
      GPL13914_C50F7.5
      GPL14144_C50F7.5_1-60_0.828_13_B
      GPL14144_C50F7.5_641-700_0.786_20_C
      GPL14144_C50F7.5_87-146_0.909_4_A
      GPL19516_CGZ0010024
      GPL21109_C50F7.5
      GPL3518_CE04243
      GPL8304_CE_WBGene00016845_A
      GPL8673_C50F7_5P00009
      GPL8673_C50F7_5P00183
      GPL8673_C50F7_5P00239
      GPL9450_C50F7.5
      cea2.p.88996
    Expression_cluster (431)
    Interaction: WBInteraction000324151
      WBInteraction000504124
      WBInteraction000536157
      WBInteraction000536158
      WBInteraction000557593
  Map_info: Positive: Positive_clone: C50F7 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: IV 3.45437
  Reference: WBPaper00038491
    WBPaper00055090
  Method: Gene