WormBase Tree Display for Gene: WBGene00016837
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| WBGene00016837 | SMap | S_parent | Sequence | C50F2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | syf-1 | |||||||
| Sequence_name | C50F2.3 | ||||||||
| Molecular_name | C50F2.3 | ||||||||
| C50F2.3.1 | |||||||||
| CE08909 | |||||||||
| Other_name | phi-4 | Person_evidence | WBPerson2582 | ||||||
| CELE_C50F2.3 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | syf-1 | ||||||||
| DB_info | Database | AceView | gene | 1E447 | |||||
| WormQTL | gene | WBGene00016837 | |||||||
| WormFlux | gene | WBGene00016837 | |||||||
| NDB | locus_tag | CELE_C50F2.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00016837|UniProtKB=P91175 | |||||||
| family | PTHR11246 | ||||||||
| NCBI | gene | 171970 | |||||||
| RefSeq | protein | NM_058849.10 | |||||||
| TREEFAM | TREEFAM_ID | TF300866 | |||||||
| TrEMBL | UniProtAcc | P91175 | |||||||
| UniProt_GCRP | UniProtAcc | P91175 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 05 Apr 2017 11:17:23 | WBPerson2970 | Name_change | CGC_name | syf-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | syf | ||||||||
| Allele (42) | |||||||||
| Strain | WBStrain00001905 | ||||||||
| WBStrain00001495 | |||||||||
| WBStrain00037603 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00050193 | ||||||||
| 00050194 | |||||||||
| 00050195 | |||||||||
| 00050196 | |||||||||
| 00050197 | |||||||||
| 00050198 | |||||||||
| 00050199 | |||||||||
| 00050200 | |||||||||
| 00122366 | |||||||||
| 00122367 | |||||||||
| Contained_in_operon | CEOP1128 | ||||||||
| Ortholog (38) | |||||||||
| Paralog | WBGene00013343 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00019762 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to be involved in generation of catalytic spliceosome for first transesterification step. Predicted to be part of Prp19 complex; U2-type catalytic step 2 spliceosome; and post-mRNA release spliceosomal complex. Expressed in head and tail. Is an ortholog of human XAB2 (XPA binding protein 2). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C50F2.3 | |||||||
| Corresponding_transcript | C50F2.3.1 | ||||||||
| Other_sequence (75) | |||||||||
| Associated_feature | WBsf643165 | ||||||||
| WBsf643166 | |||||||||
| WBsf656133 | |||||||||
| WBsf217454 | |||||||||
| Experimental_info | RNAi_result (39) | ||||||||
| Expr_pattern | Chronogram839 | ||||||||
| Expr5557 | |||||||||
| Expr5558 | |||||||||
| Expr1026971 | |||||||||
| Expr1037224 | |||||||||
| Expr1146897 | |||||||||
| Expr2017174 | |||||||||
| Expr2035310 | |||||||||
| Drives_construct | WBCnstr00002352 | ||||||||
| WBCnstr00004320 | |||||||||
| WBCnstr00027766 | |||||||||
| Construct_product | WBCnstr00027766 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (111) | |||||||||
| Interaction (204) | |||||||||
| Map_info | Map | I | Position | -1.95124 | |||||
| Positive | Positive_clone | C50F2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00048493 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064339 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
