WormBase Tree Display for Gene: WBGene00016808

WBGene00016808 SMap: S_parent: Sequence: C50D2
  Identity: Version: 2
    Name: CGC_name: sftb-6
      Sequence_name: C50D2.5
      Molecular_name: C50D2.5
        C50D2.5.1
        CE38492
      Other_name: CELE_C50D2.5 Accession_evidence: NDB BX284602
      Public_name: sftb-6
    DB_info: Database: AceView gene 2A389
        WormQTL gene WBGene00016808
        WormFlux gene WBGene00016808
        NDB locus_tag CELE_C50D2.5
        Panther gene CAEEL|WormBase=WBGene00016808|UniProtKB=Q8ITY4
          family PTHR12785
        NCBI gene 173394
        RefSeq protein NM_061258.5
        SwissProt UniProtAcc Q8ITY4
        TREEFAM TREEFAM_ID TF314161
        UniProt_GCRP UniProtAcc Q8ITY4
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:57 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 11 Mar 2021 09:37:10 WBPerson1983 Name_change: CGC_name: sftb-6
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: sftb
    Allele: WBVar01500106
      WBVar00696552
      WBVar00696553
      WBVar01498661
      WBVar02153595
      WBVar00299485
      WBVar01681525
    RNASeq_FPKM (74)
    GO_annotation (12)
    Contained_in_operon: CEOP2762
    Ortholog (34)
    Paralog: WBGene00021004 Caenorhabditis elegans From_analysis: Panther
    Structured_description: Automated_description: Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be located in nucleus. Predicted to be part of U2 snRNP and spliceosomal complex. Is an ortholog of human SF3B6 (splicing factor 3b subunit 6). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C50D2.5
    Corresponding_CDS_history: C50D2.5:wp88
      C50D2.5:wp142
    Corresponding_transcript: C50D2.5.1
    Other_sequence (65)
    Associated_feature: WBsf657233
      WBsf657234
      WBsf220719
  Experimental_info: RNAi_result: WBRNAi00042887 Inferred_automatically: RNAi_primary
      WBRNAi00062172 Inferred_automatically: RNAi_primary
      WBRNAi00085110 Inferred_automatically: RNAi_primary
      WBRNAi00012206 Inferred_automatically: RNAi_primary
      WBRNAi00075874 Inferred_automatically: RNAi_primary
      WBRNAi00033599 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1021633
      Expr1037215
      Expr1146863
      Expr2001812
      Expr2020038
    Drives_construct: WBCnstr00027789
    Construct_product: WBCnstr00027789
    Microarray_results (20)
    Expression_cluster (95)
    Interaction (53)
  Map_info: Map: II Position: -16.1702
    Positive: Positive_clone: C50D2 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00041771
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene