WormBase Tree Display for Gene: WBGene00016807

WBGene00016807 SMap: S_parent: Sequence: C50D2
  Identity: Version: 2
    Name: CGC_name: txt-1 Person_evidence: WBPerson19237
      Sequence_name: C50D2.3
      Molecular_name: C50D2.3
        C50D2.3.1
        CE08888
      Other_name: CELE_C50D2.3 Accession_evidence: NDB BX284602
      Public_name: txt-1
    DB_info: Database: AceView gene 2A397
        WormQTL gene WBGene00016807
        WormFlux gene WBGene00016807
        NDB locus_tag CELE_C50D2.3
        Panther gene CAEEL|WormBase=WBGene00016807|UniProtKB=O44797
          family PTHR31327
        NCBI gene 183651
        RefSeq protein NM_061260.3
        TREEFAM TREEFAM_ID TF319103
        TrEMBL UniProtAcc O44797
        UniProt_GCRP UniProtAcc O44797
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:57 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 28 Jan 2020 11:43:42 WBPerson1983 Name_change: CGC_name: txt-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: txt
    Allele (21)
    Strain: WBStrain00051496
    RNASeq_FPKM (74)
    Ortholog (20)
    Paralog (14)
    Structured_description: Automated_description: Enriched in germ line; serotonergic neurons; and in male based on RNA-seq; tiling array; and single-cell RNA-seq studies. Is affected by several genes including daf-2; skn-1; and dpy-10 based on microarray and RNA-seq studies. Is affected by sixteen chemicals including methylmercuric chloride; manganese chloride; and D-glucose based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: Uncharacterized protein T15H9.4-like; PDZ superfamily; and PDZ domain. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C50D2.3
    Corresponding_transcript: C50D2.3.1
    Other_sequence: CJC12790_1
    Associated_feature: WBsf1011345
      WBsf220722
  Experimental_info: RNAi_result: WBRNAi00042885 Inferred_automatically: RNAi_primary
      WBRNAi00060471 Inferred_automatically: RNAi_primary
      WBRNAi00030023 Inferred_automatically: RNAi_primary
      WBRNAi00060472 Inferred_automatically: RNAi_primary
      WBRNAi00012204 Inferred_automatically: RNAi_primary
      WBRNAi00060469 Inferred_automatically: RNAi_primary
      WBRNAi00060470 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr3620
      Expr1018556
      Expr1146861
      Expr2001811
      Expr2020037
    Drives_construct: WBCnstr00027790
    Construct_product: WBCnstr00011545
      WBCnstr00027790
    Microarray_results (17)
    Expression_cluster (118)
    Interaction (29)
  Map_info: Map: II Position: -16.1401
    Positive: Positive_clone: C50D2 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00065013
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene