WormBase Tree Display for Gene: WBGene00016725
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| WBGene00016725 | SMap | S_parent | Sequence | C46H3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | Sequence_name | C46H3.2 | |||||||
| Molecular_name | C46H3.2a | ||||||||
| C46H3.2a.1 | |||||||||
| CE51728 | |||||||||
| C46H3.2b | |||||||||
| CE33921 | |||||||||
| C46H3.2c | |||||||||
| CE51750 | |||||||||
| C46H3.2b.1 | |||||||||
| C46H3.2c.1 | |||||||||
| Other_name | CELE_C46H3.2 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | C46H3.2 | ||||||||
| DB_info | Database | AceView | gene | XB832 | |||||
| WormQTL | gene | WBGene00016725 | |||||||
| WormFlux | gene | WBGene00016725 | |||||||
| NDB | locus_tag | CELE_C46H3.2 | |||||||
| NCBI | gene | 3564865 | |||||||
| RefSeq | protein | NM_001330891.5 | |||||||
| NM_001330892.4 | |||||||||
| NM_001373221.5 | |||||||||
| TREEFAM | TREEFAM_ID | TF320582 | |||||||
| TrEMBL | UniProtAcc | Q18662 | |||||||
| A0A1C3NSM0 | |||||||||
| Q86DC0 | |||||||||
| UniProt_GCRP | UniProtAcc | Q18662 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:57 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 01 Jul 2016 14:56:15 | WBPerson1983 | Event | Acquires_merge | WBGene00016726 | ||||
| Acquires_merge | WBGene00016726 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (251) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (39) | |||||||||
| Structured_description | Automated_description | Enriched in several structures, including ABplpaaaap; accessory cell; germ line; neurons; and rect_D based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including rrf-3; eat-2; and sir-2.1 based on microarray; RNA-seq; and proteomic studies. Is affected by ten chemicals including stavudine; allantoin; and Rifampin based on RNA-seq and microarray studies. Human CASKIN1 enables identical protein binding activity. Is predicted to encode a protein with the following domains: Sterile alpha motif domain; Sterile alpha motif/pointed domain superfamily; and SAM domain (Sterile alpha motif). Is an ortholog of human CASKIN1 (CASK interacting protein 1) and CASKIN2 (CASK interacting protein 2). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C46H3.2a | |||||||
| C46H3.2b | |||||||||
| C46H3.2c | |||||||||
| Corresponding_CDS_history | C46H3.2a:wp254 | ||||||||
| Corresponding_transcript | C46H3.2a.1 | ||||||||
| C46H3.2b.1 | |||||||||
| C46H3.2c.1 | |||||||||
| Other_sequence (21) | |||||||||
| Associated_feature | WBsf653689 | ||||||||
| WBsf669997 | |||||||||
| WBsf717304 | |||||||||
| WBsf1003981 | |||||||||
| WBsf1003982 | |||||||||
| WBsf1022232 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00012050 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00042634 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00042635 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00029886 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00022634 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00012051 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1016137 | ||||||||
| Expr1020966 | |||||||||
| Expr1037181 | |||||||||
| Expr1146618 | |||||||||
| Expr1146619 | |||||||||
| Expr2001700 | |||||||||
| Expr2019927 | |||||||||
| Drives_construct | WBCnstr00027852 | ||||||||
| WBCnstr00027853 | |||||||||
| Construct_product | WBCnstr00027852 | ||||||||
| WBCnstr00027853 | |||||||||
| Microarray_results (41) | |||||||||
| Expression_cluster (154) | |||||||||
| Interaction (24) | |||||||||
| Map_info | Positive | Positive_clone | C46H3 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | X | -18.4782 | |||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| Method | Gene |
