WormBase Tree Display for Gene: WBGene00016667
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WBGene00016667 | SMap | S_parent | Sequence | C45E5 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | cpg-18 | Paper_evidence | WBPaper00053350 | |||||
Sequence_name | C45E5.4 | ||||||||
Molecular_name | C45E5.4 | ||||||||
C45E5.4.1 | |||||||||
CE08732 | |||||||||
Other_name | CELE_C45E5.4 | Accession_evidence | NDB | BX284604 | |||||
Public_name | cpg-18 | ||||||||
DB_info | Database | AceView | gene | 4G501 | |||||
WormQTL | gene | WBGene00016667 | |||||||
WormFlux | gene | WBGene00016667 | |||||||
NDB | locus_tag | CELE_C45E5.4 | |||||||
NCBI | gene | 183472 | |||||||
RefSeq | protein | NM_068453.7 | |||||||
TREEFAM | TREEFAM_ID | TF318323 | |||||||
TrEMBL | UniProtAcc | Q18642 | |||||||
UniProt_GCRP | UniProtAcc | Q18642 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:30:57 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 09 Jun 2020 16:54:31 | WBPerson1983 | Name_change | CGC_name | cpg-18 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | cpg | ||||||||
Allele (31) | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog | WBGene00039014 | Caenorhabditis briggsae | From_analysis (5) | ||||||
WBGene00073103 | Caenorhabditis remanei | From_analysis (2) | |||||||
WBGene00063960 | Caenorhabditis remanei | From_analysis (4) | |||||||
WBGene00162124 | Caenorhabditis brenneri | From_analysis (4) | |||||||
WBGene00131360 | Caenorhabditis japonica | From_analysis (3) | |||||||
CSP26.g10731 | Caenorhabditis zanzibari | From_analysis | WormBase-Compara | ||||||
CSP28.g6367 | Caenorhabditis panamensis | From_analysis | WormBase-Compara | ||||||
CSP29.g16525 | Caenorhabditis becei | From_analysis | WormBase-Compara | ||||||
CSP31.g21552 | Caenorhabditis uteleia | From_analysis | WormBase-Compara | ||||||
CSP32.g7361 | Caenorhabditis sulstoni | From_analysis | WormBase-Compara | ||||||
CSP39.g15489 | Caenorhabditis waitukubuli | From_analysis | WormBase-Compara | ||||||
CSP39.g28597 | Caenorhabditis waitukubuli | From_analysis | WormBase-Compara | ||||||
CSP40.g20351 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||||
Cni-C45E5.4 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
Csp11.Scaffold510.g2542 | Caenorhabditis tropicalis | From_analysis | WormBase-Compara | ||||||
Csp5_scaffold_00363.g10156 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||||
FL83_16229 | Caenorhabditis latens | From_analysis | WormBase-Compara | ||||||
GCK72_013589 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
Sp34_40226000 | Caenorhabditis inopinata | From_analysis | WormBase-Compara | ||||||
chrIV_pilon.g10497 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Automated_description | Enriched in ABalpppppp; ABpraaappp; OLL; PVD; and pharynx based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-2; rrf-3; and eat-2 based on microarray; tiling array; and RNA-seq studies. Is affected by eighteen chemicals including Heme; Mercuric Chloride; and rotenone based on microarray and RNA-seq studies. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C45E5.4 | |||||||
Corresponding_transcript | C45E5.4.1 | ||||||||
Other_sequence | CSC00054_1 | ||||||||
FD517304.1 | |||||||||
Associated_feature | WBsf996584 | ||||||||
Experimental_info | RNAi_result | WBRNAi00029832 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00011980 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00042530 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1024756 | ||||||||
Expr1146517 | |||||||||
Expr2001653 | |||||||||
Expr2019879 | |||||||||
Drives_construct | WBCnstr00027904 | ||||||||
Construct_product | WBCnstr00027904 | ||||||||
Microarray_results (19) | |||||||||
Expression_cluster (167) | |||||||||
Interaction | WBInteraction000392100 | ||||||||
WBInteraction000421609 | |||||||||
WBInteraction000440451 | |||||||||
Map_info | Positive | Positive_clone | C45E5 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
Interpolated_map_position | IV | 2.25428 | |||||||
Method | Gene |