WormBase Tree Display for Gene: WBGene00016624

WBGene00016624 SMap: S_parent: Sequence: C44B7
  Identity: Version: 2
    Name: CGC_name: hrpl-1 Person_evidence: WBPerson260
      Sequence_name: C44B7.2
      Molecular_name: C44B7.2a
        C44B7.2a.1
        CE34752
        C44B7.2b
        CE25812
        C44B7.2a.2
        C44B7.2b.1
      Other_name: CELE_C44B7.2 Accession_evidence: NDB BX284602
      Public_name: hrpl-1
    DB_info: Database: AceView gene 2H191C
            2H191
        WormQTL gene WBGene00016624
        WormFlux gene WBGene00016624
        NDB locus_tag CELE_C44B7.2
        Panther gene CAEEL|WormBase=WBGene00016624|UniProtKB=Q95QR5
          family PTHR15592
        NCBI gene 3565706
        RefSeq protein NM_063011.6
            NM_001393108.1
        TREEFAM TREEFAM_ID TF354318
        TrEMBL UniProtAcc Q95QR5
            Q95QR6
        UniProt_GCRP UniProtAcc Q95QR5
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:57 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 07 Dec 2017 13:24:47 WBPerson1983 Name_change: CGC_name: hrpl-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: hrpl
    Allele (38)
    RNASeq_FPKM (74)
    GO_annotation: 00088566
      00088567
      00088568
      00088569
      00088570
      00122200
      00122201
      00122202
      00122203
    Contained_in_operon: CEOP2264
    Ortholog: WBGene00032343 Caenorhabditis briggsae From_analysis: OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00054201 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00145504 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00190274 Caenorhabditis brenneri From_analysis: TreeFam
            WormBase-Compara
      WBGene00128858 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00113266 Pristionchus pacificus From_analysis: Inparanoid_8
      WBGene00223000 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g7227 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g3935 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g4446 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g1248 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g17425 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g11390 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP31.g18131 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g67 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP32.g8918 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g15064 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g19911 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g8442 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00046.g2456 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_00046.g2457 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_06719.g20443 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-C44B7.2 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g12109 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00307.g9132 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_21609 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_006368 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g11437 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g4579 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_20267320 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrII_pilon.g4889 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00255448 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00256846 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00289371 Trichuris muris From_analysis: WormBase-Compara
      WBGene00294420 Trichuris muris From_analysis: WormBase-Compara
      WBGene00294973 Trichuris muris From_analysis: WormBase-Compara
      WBGene00296248 Trichuris muris From_analysis: WormBase-Compara
      WBGene00296252 Trichuris muris From_analysis: WormBase-Compara
      FB:FBgn0003435 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            SonicParanoid
      ZFIN:ZDB-GENE-040426-710 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      ZFIN:ZDB-GENE-040426-2707 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            PhylomeDB
            SonicParanoid
      HGNC:5045 Homo sapiens From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:25127 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:104816 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1919942 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:71059 Rattus norvegicus From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1305861 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1359551 Rattus norvegicus From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Paralog: WBGene00004207 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable mRNA binding activity. Predicted to be involved in regulation of RNA splicing. Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in several diseases, including Sertoli cell-only syndrome; hepatocellular carcinoma; and systemic scleroderma. Is an ortholog of human HNRNPLL (heterogeneous nuclear ribonucleoprotein L like). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:0050457 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:5045)
      DOID:1324 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:5045)
      DOID:1319 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:5045)
      DOID:684 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:5045)
      DOID:418 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:5045)
  Molecular_info: Corresponding_CDS: C44B7.2a
      C44B7.2b
    Corresponding_CDS_history: C44B7.2:wp21
      C44B7.2a:wp104
    Corresponding_transcript: C44B7.2a.1
      C44B7.2a.2
      C44B7.2b.1
    Other_sequence (28)
    Associated_feature: WBsf644335
      WBsf221520
  Experimental_info: RNAi_result: WBRNAi00102169 Inferred_automatically: RNAi_primary
      WBRNAi00042427 Inferred_automatically: RNAi_primary
      WBRNAi00011909 Inferred_automatically: RNAi_primary
      WBRNAi00042426 Inferred_automatically: RNAi_primary
      WBRNAi00076213 Inferred_automatically: RNAi_primary
      WBRNAi00061751 Inferred_automatically: RNAi_primary
      WBRNAi00033365 Inferred_automatically: RNAi_primary
      WBRNAi00062160 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1020702
      Expr1037145
      Expr1146416
      Expr2001616
      Expr2019840
    Drives_construct: WBCnstr00027929
    Construct_product: WBCnstr00027929
    Microarray_results (36)
    Expression_cluster (86)
    Interaction (12)
  Map_info: Map: II Position: 0.137677
    Positive: Positive_clone: C44B7 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
    [210510 skd] Modified Map position as it was a reverse physical that could not be fixed by automated methods. (0.13752)
  Method: Gene