WormBase Tree Display for Gene: WBGene00016608
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| WBGene00016608 | SMap | S_parent | Sequence | C43E11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | cogc-5 | Person_evidence | WBPerson9844 | |||||
| Sequence_name | C43E11.11 | ||||||||
| Molecular_name | C43E11.11 | ||||||||
| C43E11.11.1 | |||||||||
| CE32607 | |||||||||
| Other_name | CELE_C43E11.11 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | cogc-5 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:57 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 05 Aug 2009 09:22:32 | WBPerson9133 | Name_change | CGC_name | cogc-5 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cogc | ||||||||
| Allele (54) | |||||||||
| Strain | WBStrain00032539 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00050119 | ||||||||
| 00050120 | |||||||||
| 00122191 | |||||||||
| 00122192 | |||||||||
| Contained_in_operon | CEOP1164 | ||||||||
| Ortholog (29) | |||||||||
| Structured_description | Concise_description | cogc-5 encodes an ortholog of mammalian COG-5, a subunit of lobe B of the conserved oligomeric Golgi complex (COGC); COGC-5 is also orthologous to Drosophila FOUR WAY STOP (required for fly spermatogenesis); COGC-5 is weakly required for normal gonadal distal tip cell migration, a process that also requires seven other orthologs of COGC subunits; like other lobe B subunits in both C. elegans and S. cerevisiae, COGC-5 is only partially required for normal function, while lobe A subunits are strongly required in either worms or yeast. | Paper_evidence | WBPaper00026979 | |||||
| WBPaper00028363 | |||||||||
| WBPaper00028599 | |||||||||
| WBPaper00028601 | |||||||||
| WBPaper00028603 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 30 Jul 2009 00:00:00 | ||||||||
| Automated_description | Predicted to be involved in intra-Golgi vesicle-mediated transport. Predicted to be located in Golgi apparatus and membrane. Predicted to be part of Golgi transport complex. Expressed in gonad. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIi. Is an ortholog of human COG5 (component of oligomeric golgi complex 5). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0070261 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:14857) | ||||
| Molecular_info | Corresponding_CDS | C43E11.11 | |||||||
| Corresponding_CDS_history | C43E11.11:wp90 | ||||||||
| Corresponding_transcript | C43E11.11.1 | ||||||||
| Other_sequence (17) | |||||||||
| Associated_feature | WBsf656182 | ||||||||
| WBsf217508 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00064303 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00099107 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00003139 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00042380 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00117054 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00113518 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00001792 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr4010 | ||||||||
| Expr1023075 | |||||||||
| Expr1037132 | |||||||||
| Expr1146368 | |||||||||
| Expr2010294 | |||||||||
| Expr2028536 | |||||||||
| Drives_construct | WBCnstr00027940 | ||||||||
| WBCnstr00027941 | |||||||||
| Construct_product | WBCnstr00027940 | ||||||||
| WBCnstr00027941 | |||||||||
| Microarray_results (23) | |||||||||
| Expression_cluster (93) | |||||||||
| Interaction (34) | |||||||||
| Map_info | Map | I | Position | -1.53789 | Error | 0.002724 | |||
| Positive | Positive_clone | C43E11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064339 | |||||||||
| Remark | cogc-5 was originally assigned in error to C43E11.1. | Paper_evidence | WBPaper00026979 | ||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
