WormBase Tree Display for Gene: WBGene00016577
expand all nodes | collapse all nodes | view schema
WBGene00016577 | SMap | S_parent | Sequence | C41H7 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | clec-3 | Person_evidence | WBPerson655 | |||
Sequence_name | C41H7.7 | ||||||
Molecular_name | C41H7.7 | ||||||
C41H7.7.1 | |||||||
CE32606 | |||||||
Other_name | CELE_C41H7.7 | Accession_evidence | NDB | BX284602 | |||
Public_name | clec-3 | ||||||
DB_info | Database | AceView | gene | 2D308 | |||
WormQTL | gene | WBGene00016577 | |||||
WormFlux | gene | WBGene00016577 | |||||
NDB | locus_tag | CELE_C41H7.7 | |||||
Panther | gene | CAEEL|WormBase=WBGene00016577|UniProtKB=O17155 | |||||
family | PTHR22991 | ||||||
NCBI | gene | 183396 | |||||
RefSeq | protein | NM_062025.3 | |||||
TREEFAM | TREEFAM_ID | TF351663 | |||||
TrEMBL | UniProtAcc | O17155 | |||||
UniProt_GCRP | UniProtAcc | O17155 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | clec | ||||||
Allele (54) | |||||||
RNASeq_FPKM (74) | |||||||
Ortholog (12) | |||||||
Paralog (52) | |||||||
Structured_description | Automated_description | Enriched in intestine based on RNA-seq studies. Is affected by several genes including daf-2; skn-1; and glp-1 based on microarray; tiling array; and RNA-seq studies. Is affected by forty chemicals including hydrogen sulfide; Ethanol; and 1-methylnicotinamide based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: C-type lectin fold; Spermadhesin, CUB domain superfamily; Lectin C-type domain; CUB domain; C-type lectin-like/link domain superfamily; and C-type lectin-like. | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | C41H7.7 | |||||
Corresponding_CDS_history | C41H7.7:wp90 | ||||||
Corresponding_transcript | C41H7.7.1 | ||||||
Associated_feature | WBsf222818 | ||||||
Experimental_info | RNAi_result | WBRNAi00042327 | Inferred_automatically | RNAi_primary | |||
WBRNAi00029741 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00011856 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1146319 | ||||||
Expr2010172 | |||||||
Expr2028414 | |||||||
Drives_construct | WBCnstr00027967 | ||||||
Construct_product | WBCnstr00027967 | ||||||
Microarray_results (20) | |||||||
Expression_cluster (234) | |||||||
Interaction | WBInteraction000142642 | ||||||
WBInteraction000187436 | |||||||
WBInteraction000209090 | |||||||
WBInteraction000325236 | |||||||
WBInteraction000332998 | |||||||
WBInteraction000344054 | |||||||
WBInteraction000373834 | |||||||
WBInteraction000398074 | |||||||
WBInteraction000411983 | |||||||
WBInteraction000422456 | |||||||
Map_info | Map | II | Position | -9.01504 | Error | 0.010602 | |
Positive | Positive_clone | C41H7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00031002 | ||||||
WBPaper00031686 | |||||||
WBPaper00038491 | |||||||
WBPaper00055090 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |