WormBase Tree Display for Gene: WBGene00016403
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| WBGene00016403 | SMap | S_parent | Sequence | C34D4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | grsp-3 | Person_evidence | WBPerson168 | |||||
| Sequence_name | C34D4.11 | ||||||||
| Molecular_name | C34D4.11a | ||||||||
| C34D4.11a.1 | |||||||||
| CE17505 | |||||||||
| C34D4.11b | |||||||||
| CE49207 | |||||||||
| C34D4.11b.1 | |||||||||
| Other_name | CELE_C34D4.11 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | grsp-3 | ||||||||
| DB_info | Database | AceView | gene | 4H892 | |||||
| WormQTL | gene | WBGene00016403 | |||||||
| WormFlux | gene | WBGene00016403 | |||||||
| NDB | locus_tag | CELE_C34D4.11 | |||||||
| NCBI | gene | 183209 | |||||||
| RefSeq | protein | NM_001380306.1 | |||||||
| NM_068716.2 | |||||||||
| TrEMBL | UniProtAcc | Q18444 | |||||||
| V6CJX3 | |||||||||
| UniProt_GCRP | UniProtAcc | Q18444 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:57 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 28 Jul 2005 14:16:27 | WBPerson2970 | Name_change | CGC_name | grsp-3 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | grsp | ||||||||
| Allele (18) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog | WBGene00081015 | Caenorhabditis remanei | From_analysis | OMA | |||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00028163 | Caenorhabditis briggsae | From_analysis | OMA | ||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00192240 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | ||||||
| CSP26.g15479 | Caenorhabditis zanzibari | From_analysis | WormBase-Compara | ||||||
| Cni-grsp-3 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
| Csp11.Scaffold630.g21105 | Caenorhabditis tropicalis | From_analysis | WormBase-Compara | ||||||
| Csp5_scaffold_02023.g24433 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||||
| FL83_06556 | Caenorhabditis latens | From_analysis | WormBase-Compara | ||||||
| GCK72_013851 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
| chrIV_pilon.g10763 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Enriched in several structures, including ABarpaapap; ABarpaappa; ABarpaappp; ABarppaapa; and neurons based on Chronogram; tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; tiling array; and RNA-seq studies. Is affected by twelve chemicals including rotenone; manganese chloride; and D-glucose based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C34D4.11a | |||||||
| C34D4.11b | |||||||||
| Corresponding_transcript | C34D4.11a.1 | ||||||||
| C34D4.11b.1 | |||||||||
| Other_sequence | CK351706.1 | ||||||||
| BXC00534_1 | |||||||||
| JI213682.1 | |||||||||
| Dviv_isotig21294 | |||||||||
| AE00975 | |||||||||
| TDC02024_1 | |||||||||
| CBC12848_1 | |||||||||
| CB036379.1 | |||||||||
| Associated_feature | WBsf651889 | ||||||||
| WBsf996891 | |||||||||
| WBsf996892 | |||||||||
| WBsf996893 | |||||||||
| WBsf1017658 | |||||||||
| WBsf1017659 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00041869 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00011594 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00029517 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram946 | ||||||||
| Expr1017785 | |||||||||
| Expr1145886 | |||||||||
| Expr2012280 | |||||||||
| Expr2030516 | |||||||||
| Drives_construct | WBCnstr00028099 | ||||||||
| Construct_product | WBCnstr00028099 | ||||||||
| Microarray_results | SMD_C34D4.11 | ||||||||
| 184652_at | |||||||||
| A_12_P110493 | |||||||||
| Aff_C34D4.11 | |||||||||
| GPL14144_C34D4.11_93-152_0.453_18_A | |||||||||
| GPL19516_CGZ0007469 | |||||||||
| GPL3518_CE17505 | |||||||||
| GPL8304_CE_WBGene00016403_A | |||||||||
| GPL9450_C34D4.11 | |||||||||
| cea2.i.24098 | |||||||||
| Expression_cluster (130) | |||||||||
| Interaction | WBInteraction000575816 | ||||||||
| WBInteraction000576603 | |||||||||
| Map_info | Map | IV | Position | 3.29038 | Error | 7.6e-05 | |||
| Positive | Positive_clone | C34D4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
