WormBase Tree Display for Gene: WBGene00016390
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| WBGene00016390 | SMap | S_parent | Sequence | C34B2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | ttc-1 | Person_evidence | WBPerson3828 | |||||
| Sequence_name | C34B2.5 | ||||||||
| Molecular_name | C34B2.5 | ||||||||
| C34B2.5.1 | |||||||||
| CE16893 | |||||||||
| Other_name | CELE_C34B2.5 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | ttc-1 | ||||||||
| DB_info | Database | AceView | gene | 1L252 | |||||
| WormQTL | gene | WBGene00016390 | |||||||
| WormFlux | gene | WBGene00016390 | |||||||
| NDB | locus_tag | CELE_C34B2.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00016390|UniProtKB=O44951 | |||||||
| family | PTHR46014 | ||||||||
| NCBI | gene | 172965 | |||||||
| RefSeq | protein | NM_060394.6 | |||||||
| TREEFAM | TREEFAM_ID | TF317515 | |||||||
| TrEMBL | UniProtAcc | O44951 | |||||||
| UniProt_GCRP | UniProtAcc | O44951 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:57 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 05 Sep 2017 13:25:30 | WBPerson2970 | Name_change | CGC_name | ttc-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ttc | ||||||||
| Allele (29) | |||||||||
| Strain | WBStrain00002537 | ||||||||
| WBStrain00002548 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Contained_in_operon | CEOP1636 | ||||||||
| Ortholog (27) | |||||||||
| Structured_description | Automated_description | Expressed in intestinal cell and neurons. Is predicted to encode a protein with the following domain: Tetratricopeptide-like helical domain superfamily. Is an ortholog of human TTC1 (tetratricopeptide repeat domain 1). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C34B2.5 | |||||||
| Corresponding_transcript | C34B2.5.1 | ||||||||
| Other_sequence (32) | |||||||||
| Associated_feature | WBsf664885 | ||||||||
| WBsf220271 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00029499 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00041828 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00106372 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram1188 | ||||||||
| Chronogram1315 | |||||||||
| Expr5414 | |||||||||
| Expr5415 | |||||||||
| Expr11041 | |||||||||
| Expr1012309 | |||||||||
| Expr1037019 | |||||||||
| Expr1145842 | |||||||||
| Expr2001369 | |||||||||
| Expr2019593 | |||||||||
| Drives_construct | WBCnstr00003039 | ||||||||
| WBCnstr00004508 | |||||||||
| WBCnstr00004514 | |||||||||
| WBCnstr00017870 | |||||||||
| WBCnstr00028110 | |||||||||
| Construct_product | WBCnstr00017870 | ||||||||
| WBCnstr00028110 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (89) | |||||||||
| Interaction (32) | |||||||||
| Map_info | Map | I | Position | 5.06046 | |||||
| Positive | Positive_clone | C34B2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00030887 | ||||||||
| WBPaper00034672 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00042465 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00057962 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
